Variant report

Variant	rs17036439
Chromosome Location	chr12:105266550-105266551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10161522	0.85[EUR][1000 genomes]
rs10507186	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10507187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10507188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11112218	1.00[CEU][hapmap]
rs11112276	0.85[EUR][1000 genomes]
rs11112277	0.85[EUR][1000 genomes]
rs11112279	0.85[EUR][1000 genomes]
rs11112283	0.80[EUR][1000 genomes]
rs12296144	0.83[EUR][1000 genomes]
rs12299936	0.85[EUR][1000 genomes]
rs12300005	1.00[CEU][hapmap]
rs12301432	1.00[CEU][hapmap]
rs12301850	1.00[CEU][hapmap]
rs12306191	0.85[EUR][1000 genomes]
rs12306443	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12306848	1.00[CEU][hapmap]
rs12308952	0.85[EUR][1000 genomes]
rs12309588	0.86[CHB][hapmap]
rs12313077	0.85[EUR][1000 genomes]
rs12314995	0.85[EUR][1000 genomes]
rs12315975	0.85[EUR][1000 genomes]
rs12315983	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12316001	1.00[CEU][hapmap]
rs12319632	0.85[EUR][1000 genomes]
rs12320024	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12320195	0.85[EUR][1000 genomes]
rs12320880	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12321224	0.85[EUR][1000 genomes]
rs12321226	0.85[EUR][1000 genomes]
rs12321381	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17036463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17036494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17036505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17036509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17036534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17036542	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17036549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17036558	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17041531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35879768	0.85[EUR][1000 genomes]
rs3812795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3816923	0.86[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs3935722	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4077312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4268581	0.85[EUR][1000 genomes]
rs4357778	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4375513	1.00[CEU][hapmap]
rs4553438	1.00[CEU][hapmap]
rs58005679	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58115870	0.92[ASN][1000 genomes]
rs58447363	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58483223	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60057011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60096703	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60310033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60809012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60956548	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61046283	0.96[AFR][1000 genomes]
rs61638859	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7131977	1.00[CEU][hapmap]
rs7299019	1.00[CEU][hapmap]
rs7970504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7971575	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105238400-105280000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr12:105248000-105269000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr12:105259400-105277800	Weak transcription	Pancreas	Pancrea
4	chr12:105260000-105267200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr12:105260000-105267400	Weak transcription	NHDF-Ad	bronchial
6	chr12:105260800-105280200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr12:105261400-105278000	Weak transcription	Gastric	stomach
8	chr12:105266200-105268800	Weak transcription	Liver	Liver

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