Variant report

Variant	rs60096703
Chromosome Location	chr12:105331766-105331767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105329305..105332237-chr12:105335409..105337883,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10161522	0.91[EUR][1000 genomes]
rs10507186	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10507187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10507188	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112276	0.91[EUR][1000 genomes]
rs11112277	0.91[EUR][1000 genomes]
rs11112279	0.91[EUR][1000 genomes]
rs11112283	0.86[EUR][1000 genomes]
rs11112303	0.83[EUR][1000 genomes]
rs11112307	0.85[EUR][1000 genomes]
rs11503466	0.85[EUR][1000 genomes]
rs12296144	0.88[EUR][1000 genomes]
rs12299385	0.85[EUR][1000 genomes]
rs12299936	0.91[EUR][1000 genomes]
rs12300005	0.85[EUR][1000 genomes]
rs12301432	0.85[EUR][1000 genomes]
rs12306191	0.91[EUR][1000 genomes]
rs12306443	0.91[EUR][1000 genomes]
rs12308952	0.91[EUR][1000 genomes]
rs12310790	0.85[EUR][1000 genomes]
rs12313077	0.91[EUR][1000 genomes]
rs12314995	0.91[EUR][1000 genomes]
rs12315975	0.91[EUR][1000 genomes]
rs12315983	0.91[EUR][1000 genomes]
rs12316001	0.85[EUR][1000 genomes]
rs12319632	0.91[EUR][1000 genomes]
rs12320024	0.91[EUR][1000 genomes]
rs12320195	0.91[EUR][1000 genomes]
rs12320880	0.91[EUR][1000 genomes]
rs12321224	0.91[EUR][1000 genomes]
rs12321226	0.91[EUR][1000 genomes]
rs12321381	0.91[EUR][1000 genomes]
rs17036439	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17036463	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17036494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17036505	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17036509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17036534	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17036542	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17036549	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17036558	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17041531	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35879768	0.91[EUR][1000 genomes]
rs3812795	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935722	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4077312	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4268581	0.91[EUR][1000 genomes]
rs4357778	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4553438	0.81[EUR][1000 genomes]
rs58005679	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58115870	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58447363	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58483223	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60057011	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60310033	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60809012	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60956548	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61638859	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7131977	0.83[EUR][1000 genomes]
rs7303898	0.81[EUR][1000 genomes]
rs73383412	0.81[EUR][1000 genomes]
rs73387265	0.83[EUR][1000 genomes]
rs7960890	0.81[EUR][1000 genomes]
rs7960937	0.81[EUR][1000 genomes]
rs7970504	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7975754	0.81[EUR][1000 genomes]
rs7975836	0.81[EUR][1000 genomes]
rs9738733	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
3	nsv832505	chr12:105315352-105497765	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105320200-105332200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr12:105323600-105338000	Weak transcription	Pancreas	Pancrea
3	chr12:105324800-105332200	Weak transcription	NHDF-Ad	bronchial
4	chr12:105325000-105332200	Weak transcription	Aorta	Aorta
5	chr12:105325000-105332400	Weak transcription	Osteobl	bone
6	chr12:105325600-105332400	Weak transcription	Liver	Liver
7	chr12:105331400-105332000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr12:105331400-105332200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr12:105331400-105333400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr12:105331600-105331800	Enhancers	Gastric	stomach
11	chr12:105331600-105332600	Enhancers	HSMMtube	muscle

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