Variant report

Variant	rs7975836
Chromosome Location	chr12:105328222-105328223
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10507186	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10507187	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10507188	1.00[CEU][hapmap]
rs11112218	1.00[CEU][hapmap]
rs12300005	1.00[CEU][hapmap]
rs12301432	1.00[CEU][hapmap]
rs12301850	1.00[CEU][hapmap]
rs12306443	1.00[CEU][hapmap]
rs12306848	1.00[CEU][hapmap]
rs12315983	1.00[CEU][hapmap]
rs12316001	1.00[CEU][hapmap]
rs12320024	1.00[CEU][hapmap]
rs12320880	1.00[CEU][hapmap]
rs12321381	1.00[CEU][hapmap]
rs17036439	1.00[CEU][hapmap]
rs17036463	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17036494	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17036505	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17036509	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17036534	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17036542	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17036549	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17041531	1.00[CEU][hapmap]
rs3812795	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs3923753	0.86[CHB][hapmap];0.80[YRI][hapmap];0.97[EUR][1000 genomes]
rs4077312	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4375513	1.00[CEU][hapmap]
rs4553438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58483223	0.81[EUR][1000 genomes]
rs60096703	0.81[EUR][1000 genomes]
rs7131977	1.00[CEU][hapmap]
rs7299019	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7303898	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73383412	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7960890	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7960937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7970504	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7973570	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7975754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
3	nsv832505	chr12:105315352-105497765	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105290800-105331600	Weak transcription	Gastric	stomach
2	chr12:105320200-105332200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr12:105323600-105338000	Weak transcription	Pancreas	Pancrea
4	chr12:105324800-105332200	Weak transcription	NHDF-Ad	bronchial
5	chr12:105325000-105332200	Weak transcription	Aorta	Aorta
6	chr12:105325000-105332400	Weak transcription	Osteobl	bone
7	chr12:105325600-105332400	Weak transcription	Liver	Liver
8	chr12:105325800-105328400	Enhancers	GM12878-XiMat	blood

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