Variant report

Variant	rs7299019
Chromosome Location	chr12:105271085-105271086
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:104775473..104776325-chr12:105270608..105271497,4	MCF-7	breast:
2	chr12:105127572..105128143-chr12:105270828..105271461,2	MCF-7	breast:
3	chr12:104775299..104776239-chr12:105270170..105271316,3	MCF-7	breast:
4	chr12:105270594..105271121-chr3:63820798..63821350,2	MCF-7	breast:
5	chr12:104775284..104776231-chr12:105270838..105271592,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10507186	1.00[CEU][hapmap];0.90[GIH][hapmap]
rs10507187	1.00[CEU][hapmap];0.90[GIH][hapmap]
rs10507188	1.00[CEU][hapmap];0.90[GIH][hapmap]
rs11112218	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12296528	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12300005	1.00[CEU][hapmap];0.90[GIH][hapmap]
rs12301432	1.00[CEU][hapmap];0.90[GIH][hapmap]
rs12301850	1.00[CEU][hapmap];0.89[GIH][hapmap]
rs12306443	1.00[CEU][hapmap];0.90[GIH][hapmap]
rs12306848	1.00[CEU][hapmap]
rs12315983	1.00[CEU][hapmap]
rs12316001	1.00[CEU][hapmap]
rs12316185	0.97[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12320024	1.00[CEU][hapmap];0.90[GIH][hapmap]
rs12320880	1.00[CEU][hapmap]
rs12321381	1.00[CEU][hapmap]
rs17036439	1.00[CEU][hapmap]
rs17036463	1.00[CEU][hapmap];0.90[GIH][hapmap]
rs17036494	1.00[CEU][hapmap]
rs17036505	1.00[CEU][hapmap]
rs17036509	1.00[CEU][hapmap]
rs17036534	1.00[CEU][hapmap]
rs17036542	1.00[CEU][hapmap]
rs17036549	1.00[CEU][hapmap]
rs17041531	1.00[CEU][hapmap]
rs3812795	1.00[CEU][hapmap];0.90[GIH][hapmap]
rs3923753	0.81[CHB][hapmap]
rs4077312	1.00[CEU][hapmap];0.90[GIH][hapmap]
rs4375513	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4553438	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs55652121	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs57988025	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7131977	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs7303898	0.93[ASN][1000 genomes]
rs73383412	0.96[ASN][1000 genomes]
rs7960890	0.93[ASN][1000 genomes]
rs7960937	0.94[ASN][1000 genomes]
rs7970504	1.00[CEU][hapmap]
rs7973570	0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7975754	0.94[ASN][1000 genomes]
rs7975836	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105238400-105280000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr12:105259400-105277800	Weak transcription	Pancreas	Pancrea
3	chr12:105260800-105280200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr12:105261400-105278000	Weak transcription	Gastric	stomach
5	chr12:105267800-105279600	Weak transcription	A549	lung
6	chr12:105267800-105284200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr12:105269800-105277000	Weak transcription	Liver	Liver
8	chr12:105269800-105277400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr12:105271000-105271200	Enhancers	Fetal Brain Female	brain

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