Variant report

Variant	rs10162742
Chromosome Location	chr15:77580211-77580212
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr15:77580077-77580250	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:77571666..77575195-chr15:77579317..77581859,3	K562	blood:
2	chr15:77580009..77582319-chr15:77583158..77585492,2	K562	blood:
3	chr15:77576555..77578246-chr15:77578519..77580387,2	K562	blood:

Variant related genes	Relation type
PEAK1	TF binding region
ENSG00000173517	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10519158	0.85[YRI][hapmap]
rs11856084	0.85[YRI][hapmap]
rs12324366	0.85[YRI][hapmap]
rs12324795	0.85[YRI][hapmap]
rs1446313	0.85[YRI][hapmap]
rs17471480	0.85[YRI][hapmap]
rs1867780	0.85[YRI][hapmap]
rs2292594	0.85[YRI][hapmap]
rs28542588	1.00[AMR][1000 genomes]
rs4886852	0.83[YRI][hapmap]
rs74025198	1.00[AMR][1000 genomes]
rs74025199	1.00[AMR][1000 genomes]
rs74025200	1.00[AMR][1000 genomes]
rs74026921	1.00[AMR][1000 genomes]
rs7496431	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv1041064	chr15:77497903-77631698	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1051744	chr15:77511489-77679160	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1044270	chr15:77534919-77611256	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv542445	chr15:77534919-77611256	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv1830237	chr15:77535785-77694607	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv482689	chr15:77576396-77731559	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77541800-77589800	Weak transcription	Fetal Intestine Small	intestine
2	chr15:77544400-77581000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr15:77544600-77589200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr15:77559800-77585200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:77562200-77589600	Weak transcription	Primary T cells from cord blood	blood
6	chr15:77571800-77585600	Weak transcription	Right Ventricle	heart
7	chr15:77572000-77582000	Weak transcription	Left Ventricle	heart
8	chr15:77572600-77580800	Weak transcription	Fetal Muscle Leg	muscle
9	chr15:77573600-77580600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr15:77573600-77589400	Weak transcription	Fetal Stomach	stomach
11	chr15:77574600-77580800	Weak transcription	Fetal Brain Male	brain
12	chr15:77574600-77585200	Weak transcription	Psoas Muscle	Psoas
13	chr15:77575000-77585400	Weak transcription	NH-A	brain
14	chr15:77575400-77580400	Weak transcription	Brain Hippocampus Middle	brain
15	chr15:77575400-77586000	Weak transcription	HepG2	liver
16	chr15:77576400-77583200	Weak transcription	Fetal Heart	heart
17	chr15:77577200-77619400	Weak transcription	HSMM	muscle
18	chr15:77577800-77587200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:77577800-77590000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr15:77578000-77583600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr15:77578000-77584800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr15:77578800-77582400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:77579000-77580600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr15:77579400-77580600	Enhancers	Osteobl	bone
25	chr15:77579400-77580800	Enhancers	NHDF-Ad	bronchial
26	chr15:77579600-77580800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:77580000-77581000	Enhancers	Adipose Nuclei	Adipose
28	chr15:77580200-77580600	Enhancers	Fetal Lung	lung
29	chr15:77580200-77587800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:77580200-77587800	Weak transcription	NHLF	lung

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