Variant report

Variant	rs10162872
Chromosome Location	chr15:60427939-60427940
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11636285	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1481845	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17191267	0.84[EUR][1000 genomes]
rs6494167	0.97[ASN][1000 genomes]
rs716356	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7176227	0.84[ASN][1000 genomes]
rs7177039	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60421800-60429200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:60421800-60429600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:60422800-60429200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr15:60423000-60428200	Weak transcription	HSMM	muscle
5	chr15:60426800-60430000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:60427000-60430000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:60427000-60435000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:60427400-60428200	Enhancers	Brain Substantia Nigra	brain
9	chr15:60427400-60428600	Enhancers	Brain Anterior Caudate	brain
10	chr15:60427400-60429600	Enhancers	Brain Hippocampus Middle	brain
11	chr15:60427600-60428600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:60427600-60428800	Enhancers	Brain Cingulate Gyrus	brain
13	chr15:60427800-60428600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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