Variant report

Variant	rs10163179
Chromosome Location	chr15:42879555-42879556
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42873048..42876397-chr15:42877350..42880260,3	K562	blood:
2	chr15:42870994..42874548-chr15:42877350..42881148,3	K562	blood:
3	chr15:42867158..42870086-chr15:42878537..42881066,3	K562	blood:
4	chr15:42867158..42870552-chr15:42876715..42882343,6	K562	blood:

Variant related genes	Relation type
ENSG00000260282	Chromatin interaction
ENSG00000159433	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13379865	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16973384	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28364417	0.81[YRI][hapmap]
rs28364427	0.94[YRI][hapmap]
rs9652417	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42869000-42887400	Weak transcription	Small Intestine	intestine
2	chr15:42874000-42883000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:42874200-42880800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:42874200-42883400	Weak transcription	NHEK	skin
5	chr15:42874200-42883600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr15:42874200-42885800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:42874200-42894400	Weak transcription	A549	lung
8	chr15:42874200-42896600	Weak transcription	Hela-S3	cervix
9	chr15:42874400-42880000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:42874400-42883400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr15:42874400-42884800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:42874400-42886400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:42874400-42887000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr15:42874400-42887000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr15:42874400-42887200	Weak transcription	Placenta	Placenta
16	chr15:42874400-42887800	Weak transcription	HSMMtube	muscle
17	chr15:42874400-42895800	Weak transcription	Thymus	Thymus
18	chr15:42874400-42900200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:42874400-42900200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr15:42874400-42900200	Weak transcription	Lung	lung
21	chr15:42874600-42880400	Weak transcription	Fetal Intestine Large	intestine
22	chr15:42874600-42881600	Weak transcription	Primary B cells from cord blood	blood
23	chr15:42874600-42888200	Weak transcription	Colonic Mucosa	Colon
24	chr15:42874600-42896200	Weak transcription	Primary T cells from cord blood	blood
25	chr15:42874800-42929800	Weak transcription	Fetal Brain Female	brain
26	chr15:42875400-42883000	Weak transcription	Ovary	ovary
27	chr15:42876000-42888400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr15:42876800-42879800	Weak transcription	Osteobl	bone
29	chr15:42876800-42883800	Weak transcription	Fetal Intestine Small	intestine
30	chr15:42876800-42885200	Weak transcription	NHLF	lung
31	chr15:42876800-42887200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:42876800-42887400	Weak transcription	Aorta	Aorta
33	chr15:42876800-42900200	Weak transcription	HMEC	breast
34	chr15:42877000-42879600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr15:42877000-42879600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:42877000-42881000	Strong transcription	Fetal Muscle Leg	muscle
37	chr15:42877000-42881200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr15:42877000-42882400	Weak transcription	HepG2	liver
39	chr15:42877000-42883000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr15:42877000-42883000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr15:42877000-42883600	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr15:42877000-42883600	Weak transcription	Fetal Lung	lung
43	chr15:42877000-42885000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr15:42877000-42885000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr15:42877000-42886800	Weak transcription	Right Atrium	heart
46	chr15:42877000-42887000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr15:42877000-42887400	Weak transcription	Fetal Kidney	kidney
48	chr15:42877000-42887400	Weak transcription	NH-A	brain
49	chr15:42877000-42888200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr15:42877000-42890200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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