Variant report

Variant	rs13379865
Chromosome Location	chr15:42898498-42898499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42896121..42899358-chr15:42903521..42907141,3	K562	blood:
2	chr15:42890368..42894059-chr15:42896561..42900467,4	K562	blood:
3	chr15:42896121..42899358-chr15:42902188..42907141,4	K562	blood:
4	chr15:42898237..42899774-chr15:42911395..42914292,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10163179	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16973384	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9652417	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42874400-42900200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:42874400-42900200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr15:42874400-42900200	Weak transcription	Lung	lung
4	chr15:42874800-42929800	Weak transcription	Fetal Brain Female	brain
5	chr15:42876800-42900200	Weak transcription	HMEC	breast
6	chr15:42877000-42900200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:42877200-42911200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr15:42888600-42901200	Weak transcription	Fetal Brain Male	brain
9	chr15:42888800-42901000	Weak transcription	Brain Angular Gyrus	brain
10	chr15:42888800-42909600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:42888800-42911000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:42889600-42903600	Weak transcription	Ovary	ovary
13	chr15:42895000-42911800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:42895200-42898600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr15:42895200-42900000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr15:42895200-42914200	Weak transcription	HepG2	liver
17	chr15:42895200-42920800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:42896200-42898800	Enhancers	Fetal Stomach	stomach
19	chr15:42896200-42901600	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr15:42896400-42901600	Enhancers	Fetal Heart	heart
21	chr15:42896600-42898800	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr15:42896600-42898800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr15:42896800-42898600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:42896800-42898600	Enhancers	Rectal Smooth Muscle	rectum
25	chr15:42896800-42901800	Enhancers	Primary T cells fromperipheralblood	blood
26	chr15:42896800-42902000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:42897000-42898600	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr15:42897000-42899200	Enhancers	Left Ventricle	heart
29	chr15:42897000-42899400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr15:42897000-42901800	Enhancers	Primary B cells from peripheral blood	blood
31	chr15:42897200-42898600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr15:42897200-42898600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr15:42897200-42898600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:42897200-42898600	Enhancers	Fetal Lung	lung
35	chr15:42897200-42898800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:42897400-42898800	Enhancers	Aorta	Aorta
37	chr15:42897400-42899200	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr15:42897600-42900200	Weak transcription	NH-A	brain
39	chr15:42897800-42898600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr15:42897800-42898800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr15:42897800-42899000	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr15:42897800-42900600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:42897800-42900600	Enhancers	Primary hematopoietic stem cells	blood
44	chr15:42897800-42903800	Weak transcription	Psoas Muscle	Psoas
45	chr15:42897800-42914600	Weak transcription	Brain Germinal Matrix	brain
46	chr15:42897800-42930200	Weak transcription	HSMM	muscle
47	chr15:42898000-42898600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr15:42898000-42898600	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr15:42898000-42898600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr15:42898000-42898600	Enhancers	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links