Variant report

Variant	rs1016371
Chromosome Location	chr9:85379326-85379327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11791784	0.91[EUR][1000 genomes]
rs11795330	0.91[EUR][1000 genomes]
rs17669258	0.95[EUR][1000 genomes]
rs7022495	0.87[AFR][1000 genomes]
rs7023125	0.86[AFR][1000 genomes]
rs72739143	0.95[EUR][1000 genomes]
rs73648489	0.81[AFR][1000 genomes]
rs73648492	0.87[AFR][1000 genomes]
rs7870645	0.94[AFR][1000 genomes]
rs7873650	0.85[AFR][1000 genomes]
rs7873769	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1035314	chr9:85348780-85549246	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540161	chr9:85348780-85549246	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039930	chr9:85349993-85536746	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2762819	chr9:85376276-85384244	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2764140	chr9:85376276-85384244	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv442159	chr9:85376569-85384244	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85374400-85391000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:85375600-85379600	Enhancers	Fetal Thymus	thymus
3	chr9:85376400-85379600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:85377000-85380600	Enhancers	Primary hematopoietic stem cells	blood
5	chr9:85377200-85381200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:85377200-85381200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:85377400-85391200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:85378000-85390800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr9:85378400-85379800	Enhancers	Fetal Stomach	stomach
10	chr9:85378600-85379600	Enhancers	Thymus	Thymus
11	chr9:85378600-85381000	Enhancers	Dnd41	blood
12	chr9:85378600-85382800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr9:85379000-85381200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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