Variant report

Variant	rs7873769
Chromosome Location	chr9:85389938-85389939
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1016371	0.83[AFR][1000 genomes]
rs7022495	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7023125	1.00[AMR][1000 genomes]
rs73648489	1.00[AMR][1000 genomes]
rs73648492	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73648494	0.83[AMR][1000 genomes]
rs73648496	0.83[AMR][1000 genomes]
rs73648497	0.83[AMR][1000 genomes]
rs7870645	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7873650	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428539	chr9:85240027-85402367	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1035314	chr9:85348780-85549246	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540161	chr9:85348780-85549246	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039930	chr9:85349993-85536746	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85374400-85391000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:85377400-85391200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:85378000-85390800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:85389800-85390200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:85389800-85390200	Active TSS	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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