Variant report

Variant	rs10164108
Chromosome Location	chr18:44532455-44532456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11659693	0.83[EUR][1000 genomes]
rs11660085	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12386118	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1465722	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1539881	0.83[EUR][1000 genomes]
rs1970668	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2156049	0.83[EUR][1000 genomes]
rs2187091	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2571000	0.80[EUR][1000 genomes]
rs2571028	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2576050	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs477826	0.80[EUR][1000 genomes]
rs478820	0.80[EUR][1000 genomes]
rs4890343	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4890347	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4890698	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4890700	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4890704	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs501062	0.81[EUR][1000 genomes]
rs501882	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs504668	0.81[EUR][1000 genomes]
rs513775	0.80[EUR][1000 genomes]
rs541634	0.82[EUR][1000 genomes]
rs578146	0.80[EUR][1000 genomes]
rs58993513	0.83[EUR][1000 genomes]
rs593340	0.82[EUR][1000 genomes]
rs616900	0.81[EUR][1000 genomes]
rs641366	0.82[EUR][1000 genomes]
rs644731	0.82[EUR][1000 genomes]
rs646128	0.80[EUR][1000 genomes]
rs680018	0.81[EUR][1000 genomes]
rs693503	0.82[EUR][1000 genomes]
rs8086286	0.83[EUR][1000 genomes]
rs8094654	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8096263	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs892586	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9304336	0.83[EUR][1000 genomes]
rs9916891	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9947131	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9948103	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9948405	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9954336	0.83[EUR][1000 genomes]
rs9959877	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9960463	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9966646	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9629	chr18:44264693-44757511	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv833639	chr18:44426363-44552719	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1057629	chr18:44500259-44539223	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1062444	chr18:44503472-44539223	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1062682	chr18:44509052-44539223	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1056744	chr18:44509052-44581752	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv909609	chr18:44513071-44597092	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	esv1818108	chr18:44519357-44549177	Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv1825684	chr18:44526351-44549177	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44527400-44538800	Weak transcription	Brain Hippocampus Middle	brain

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