Variant report

Variant	rs1465722
Chromosome Location	chr18:44564499-44564500
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10070	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10164108	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10502879	0.86[CEU][hapmap]
rs10853545	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs10853547	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs11659693	0.81[EUR][1000 genomes]
rs11660085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12386118	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1539878	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1539881	0.81[EUR][1000 genomes]
rs1970668	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2010834	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2032215	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs2156049	0.81[EUR][1000 genomes]
rs2156050	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2164104	1.00[CEU][hapmap]
rs2187091	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2187092	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs2571000	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2571019	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2571024	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2571026	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2571028	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2576040	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2576042	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2576050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2576051	0.91[ASN][1000 genomes]
rs3744863	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs477826	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4890341	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs4890343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4890347	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4890698	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4890699	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4890700	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4890704	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4890707	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs501062	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs501882	0.96[CEU][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs504668	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs513775	0.96[CEU][hapmap];0.86[JPT][hapmap]
rs530205	0.96[CEU][hapmap];0.94[JPT][hapmap]
rs541634	0.82[EUR][1000 genomes]
rs553456	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs578451	0.96[CEU][hapmap];0.94[JPT][hapmap]
rs58993513	0.81[EUR][1000 genomes]
rs590923	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs593340	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs605487	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs607780	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs616900	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs626217	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs641366	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs642897	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs644731	0.96[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs646128	0.96[CEU][hapmap];0.94[JPT][hapmap]
rs649076	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs6507709	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs658756	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs680018	0.96[CEU][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs693503	0.82[EUR][1000 genomes]
rs695001	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs7227700	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs7240239	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs7244778	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs8086286	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs8094654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8095373	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs8096263	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs892586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9304336	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs9304340	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9916891	0.82[EUR][1000 genomes]
rs9947131	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9948103	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9948405	0.80[EUR][1000 genomes]
rs9954336	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs9959877	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9960463	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9966646	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs998819	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9629	chr18:44264693-44757511	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1056744	chr18:44509052-44581752	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv909609	chr18:44513071-44597092	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	esv1805582	chr18:44542384-44577288	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv2282	chr18:44547638-44590333	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv909610	chr18:44549455-44602249	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv833640	chr18:44552276-44714872	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv917076	chr18:44558149-44568902	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv909611	chr18:44560875-44614090	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv909612	chr18:44560875-44681485	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv1057235	chr18:44564162-44595809	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1067278	chr18:44564162-44629283	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44564000-44564600	Enhancers	GM12878-XiMat	blood

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