Variant report

Variant	rs10164698
Chromosome Location	chr2:115815761-115815762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10175592	1.00[AMR][1000 genomes]
rs12711814	1.00[AMR][1000 genomes]
rs12711815	1.00[AMR][1000 genomes]
rs1396935	1.00[AMR][1000 genomes]
rs1848756	1.00[AMR][1000 genomes]
rs1980005	1.00[AMR][1000 genomes]
rs1980006	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2136543	1.00[AMR][1000 genomes]
rs4849376	0.92[AFR][1000 genomes]
rs6542234	1.00[AMR][1000 genomes]
rs6755919	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7593027	1.00[AMR][1000 genomes]
rs8179805	1.00[AMR][1000 genomes]
rs9308705	1.00[AMR][1000 genomes]
rs966821	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs977220	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs977221	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459030	chr2:115800609-115834653	Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv459041	chr2:115800609-115834653	Weak transcription ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv582732	chr2:115800609-115834653	ZNF genes & repeats Weak transcription Enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115815400-115818000	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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