Variant report

Variant	rs9308705
Chromosome Location	chr2:115751591-115751592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10164698	1.00[AMR][1000 genomes]
rs10175592	1.00[AMR][1000 genomes]
rs12711814	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12711815	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1396935	1.00[AMR][1000 genomes]
rs1848756	1.00[AMR][1000 genomes]
rs1980005	1.00[AMR][1000 genomes]
rs1980006	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2136543	1.00[AMR][1000 genomes]
rs6542234	1.00[AMR][1000 genomes]
rs6755919	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7593027	1.00[AMR][1000 genomes]
rs8179805	1.00[AMR][1000 genomes]
rs966821	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs977220	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs977221	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874917	chr2:115723034-115788593	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115751000-115757200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:115751400-115751600	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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