Variant report

Variant	rs10164886
Chromosome Location	chr2:55155672-55155673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10153551	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10153785	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10176018	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10200365	0.86[AFR][1000 genomes]
rs4502460	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6545461	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6744548	0.90[ASN][1000 genomes]
rs7586885	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7589959	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7590130	0.90[ASN][1000 genomes]
rs7590241	0.90[ASN][1000 genomes]
rs7590265	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7600676	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7606659	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309261	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9808435	0.94[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834069	chr2:55096597-55251680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55150000-55168400	Weak transcription	Pancreas	Pancrea
2	chr2:55152200-55156400	Enhancers	Fetal Muscle Leg	muscle
3	chr2:55153800-55156000	Enhancers	HSMMtube	muscle
4	chr2:55154200-55156800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:55154200-55166600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr2:55154400-55157000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr2:55154400-55157600	Weak transcription	Adipose Nuclei	Adipose
8	chr2:55154400-55168000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr2:55154800-55155800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:55154800-55157800	Weak transcription	Fetal Brain Male	brain
11	chr2:55154800-55167800	Weak transcription	Brain Angular Gyrus	brain
12	chr2:55155000-55156400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr2:55155000-55157200	Weak transcription	Brain Anterior Caudate	brain
14	chr2:55155400-55156400	Enhancers	Esophagus	oesophagus
15	chr2:55155400-55156400	Enhancers	NHEK	skin
16	chr2:55155600-55155800	Enhancers	Psoas Muscle	Psoas
17	chr2:55155600-55156400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:55155600-55156600	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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