Variant report

Variant	rs10176018
Chromosome Location	chr2:55153731-55153732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10153551	0.90[ASN][1000 genomes]
rs10153785	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10164886	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13390825	0.83[AFR][1000 genomes]
rs4502460	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6545461	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6744548	0.81[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7355309	0.81[CEU][hapmap];0.90[YRI][hapmap]
rs7574696	1.00[JPT][hapmap]
rs7586885	0.80[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7589959	0.87[CEU][hapmap];0.90[ASN][1000 genomes]
rs7590130	0.90[ASN][1000 genomes]
rs7590241	0.82[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7590265	0.80[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7594699	0.83[AFR][1000 genomes]
rs7600676	0.80[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7606659	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309261	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9808435	0.81[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834069	chr2:55096597-55251680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55134000-55153800	Weak transcription	Brain Angular Gyrus	brain
2	chr2:55148600-55155600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:55150000-55168400	Weak transcription	Pancreas	Pancrea
4	chr2:55152200-55154200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr2:55152200-55154400	Enhancers	Adipose Nuclei	Adipose
6	chr2:55152200-55156400	Enhancers	Fetal Muscle Leg	muscle
7	chr2:55153600-55153800	Enhancers	Fetal Muscle Trunk	muscle
8	chr2:55153600-55154000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:55153600-55154200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr2:55153600-55154200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr2:55153600-55154400	Enhancers	Brain Cingulate Gyrus	brain
12	chr2:55153600-55154600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:55153600-55154600	Enhancers	Brain Substantia Nigra	brain
14	chr2:55153600-55154600	Enhancers	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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