Variant report

Variant	rs7355309
Chromosome Location	chr2:55135863-55135864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:55135110..55137315-chr2:55274820..55277436,2	MCF-7	breast:
2	chr2:55135774..55137810-chr2:55139931..55142495,2	K562	blood:
3	chr2:55131952..55133594-chr2:55135173..55137176,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10164641	0.84[EUR][1000 genomes]
rs13383645	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13390825	0.82[ASN][1000 genomes]
rs13391802	0.82[ASN][1000 genomes]
rs13408207	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17346218	0.82[ASN][1000 genomes]
rs3769326	1.00[CHB][hapmap]
rs6545454	0.85[EUR][1000 genomes]
rs6729866	0.80[EUR][1000 genomes]
rs6746577	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7589959	0.86[CEU][hapmap]
rs7595599	0.84[EUR][1000 genomes]
rs997198	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834069	chr2:55096597-55251680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55095200-55148200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr2:55132000-55136600	Enhancers	Liver	Liver
3	chr2:55132000-55140600	Weak transcription	Esophagus	oesophagus
4	chr2:55134000-55153800	Weak transcription	Brain Angular Gyrus	brain
5	chr2:55134200-55147600	Weak transcription	Fetal Brain Female	brain
6	chr2:55134400-55153600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:55135200-55137800	Enhancers	NHDF-Ad	bronchial
8	chr2:55135400-55136200	Enhancers	Fetal Muscle Leg	muscle
9	chr2:55135600-55136000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:55135600-55136000	Enhancers	Fetal Intestine Small	intestine
11	chr2:55135600-55136200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:55135600-55136200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:55135600-55136200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr2:55135600-55136200	Enhancers	HepG2	liver
15	chr2:55135600-55136200	Enhancers	HSMM	muscle
16	chr2:55135600-55136200	Enhancers	HSMMtube	muscle
17	chr2:55135600-55136800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:55135600-55136800	Enhancers	Psoas Muscle	Psoas
19	chr2:55135600-55136800	Enhancers	Osteobl	bone
20	chr2:55135600-55137000	Enhancers	NHLF	lung
21	chr2:55135600-55138000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:55135800-55136000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:55135800-55136200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr2:55135800-55136200	Enhancers	Lung	lung
25	chr2:55135800-55136400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr2:55135800-55136400	Enhancers	Fetal Heart	heart
27	chr2:55135800-55136600	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr2:55135800-55136600	Enhancers	NH-A	brain
29	chr2:55135800-55136800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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