Variant report

Variant	rs3769326
Chromosome Location	chr2:55204895-55204896
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:55204478-55205270	HUVEC	blood vessel:	n/a	n/a
2	POLR2A	chr2:55201696-55205299	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr2:55204435..55209089-chr2:55274911..55278052,4	MCF-7	breast:
2	chr2:55180338..55182211-chr2:55203492..55207061,3	MCF-7	breast:
3	chr2:55197790..55202065-chr2:55203128..55206918,7	K562	blood:

Variant related genes	Relation type
RTN4	TF binding region
ENSG00000115310	Chromatin interaction
ENSG00000214595	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7355309	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834069	chr2:55096597-55251680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55183200-55206800	Weak transcription	Stomach Mucosa	stomach
2	chr2:55184800-55214800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:55191800-55211600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr2:55191800-55234200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:55193400-55214800	Strong transcription	HepG2	liver
6	chr2:55193600-55214600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:55193800-55211800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr2:55194000-55211800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr2:55195000-55215200	Strong transcription	Dnd41	blood
10	chr2:55195200-55205600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:55195200-55205800	Strong transcription	HMEC	breast
12	chr2:55195400-55205200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr2:55195600-55210800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr2:55195800-55216200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr2:55196000-55205800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr2:55196200-55214600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:55196200-55226400	Weak transcription	Thymus	Thymus
18	chr2:55196600-55208400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr2:55196600-55217200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:55196600-55217200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr2:55196800-55205600	Strong transcription	NHEK	skin
22	chr2:55197800-55207800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr2:55198200-55212000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr2:55198200-55237200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr2:55198600-55215200	Weak transcription	Lung	lung
26	chr2:55198800-55215200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr2:55199000-55206800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr2:55199200-55206600	Weak transcription	Hela-S3	cervix
29	chr2:55199200-55212400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr2:55199400-55208000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr2:55200200-55209600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr2:55200400-55213400	Weak transcription	Fetal Brain Male	brain
33	chr2:55200800-55208000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr2:55200800-55216600	Weak transcription	Colonic Mucosa	Colon
35	chr2:55201000-55208400	Weak transcription	Placenta	Placenta
36	chr2:55201200-55205200	Genic enhancers	HSMM	muscle
37	chr2:55201200-55208000	Weak transcription	Primary B cells from peripheral blood	blood
38	chr2:55201400-55208400	Weak transcription	Primary B cells from cord blood	blood
39	chr2:55201800-55205000	Enhancers	Brain Hippocampus Middle	brain
40	chr2:55202000-55207800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr2:55202200-55205000	Enhancers	Brain Angular Gyrus	brain
42	chr2:55202200-55205000	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr2:55202200-55205200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr2:55202200-55205200	Genic enhancers	NHDF-Ad	bronchial
45	chr2:55202400-55205000	Genic enhancers	NHLF	lung
46	chr2:55202400-55205400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr2:55202600-55205600	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr2:55202800-55205000	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr2:55203400-55205200	Enhancers	Aorta	Aorta
50	chr2:55203400-55205200	Genic enhancers	Fetal Muscle Leg	muscle

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