Variant report

Variant	rs7594699
Chromosome Location	chr2:55154207-55154208
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10176018	0.83[AFR][1000 genomes]
rs17046514	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs4671991	0.86[CHB][hapmap]
rs4671993	1.00[CHB][hapmap]
rs733916	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834069	chr2:55096597-55251680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55148600-55155600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:55150000-55168400	Weak transcription	Pancreas	Pancrea
3	chr2:55152200-55154400	Enhancers	Adipose Nuclei	Adipose
4	chr2:55152200-55156400	Enhancers	Fetal Muscle Leg	muscle
5	chr2:55153600-55154400	Enhancers	Brain Cingulate Gyrus	brain
6	chr2:55153600-55154600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:55153600-55154600	Enhancers	Brain Substantia Nigra	brain
8	chr2:55153600-55154600	Enhancers	Psoas Muscle	Psoas
9	chr2:55153800-55154800	Enhancers	Brain Angular Gyrus	brain
10	chr2:55153800-55154800	Enhancers	Brain Hippocampus Middle	brain
11	chr2:55153800-55156000	Enhancers	HSMMtube	muscle
12	chr2:55154000-55154600	Enhancers	HSMM	muscle
13	chr2:55154000-55155000	Enhancers	Brain Anterior Caudate	brain
14	chr2:55154000-55155200	Enhancers	Stomach Smooth Muscle	stomach
15	chr2:55154200-55154400	Enhancers	Esophagus	oesophagus
16	chr2:55154200-55155000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr2:55154200-55155000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr2:55154200-55156800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:55154200-55166600	Weak transcription	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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