Variant report

Variant	rs10165341
Chromosome Location	chr2:74205502-74205503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:74194837..74202788-chr2:74203103..74212249,15	K562	blood:
2	chr2:74187365..74198553-chr2:74205167..74212961,17	MCF-7	breast:
3	chr2:74201754..74203376-chr2:74204161..74205966,2	MCF-7	breast:
4	chr2:74151695..74161558-chr2:74205273..74215127,19	K562	blood:
5	chr2:74151187..74158039-chr2:74203173..74216266,29	MCF-7	breast:
6	chr2:74147649..74157677-chr2:74203379..74217813,34	MCF-7	breast:
7	chr2:74163103..74165091-chr2:74205169..74208171,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000201876	Chromatin interaction
ENSG00000114956	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13387174	1.00[YRI][hapmap]
rs13403501	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011177	chr2:74167343-74239905	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3584956	chr2:74197109-74317135	Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74187200-74206600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:74187800-74206200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:74198400-74208400	Weak transcription	Aorta	Aorta
4	chr2:74199000-74206200	Weak transcription	Esophagus	oesophagus
5	chr2:74199000-74206800	Weak transcription	Pancreas	Pancrea
6	chr2:74199200-74206000	Weak transcription	Lung	lung
7	chr2:74199200-74206200	Weak transcription	NHEK	skin
8	chr2:74199200-74206600	Weak transcription	A549	lung
9	chr2:74199400-74205800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr2:74199600-74206200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr2:74200200-74205600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr2:74200200-74205600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr2:74200400-74207600	Weak transcription	Spleen	Spleen
14	chr2:74200600-74205600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr2:74200600-74205800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr2:74200600-74205800	Weak transcription	Thymus	Thymus
17	chr2:74200600-74206000	Weak transcription	Left Ventricle	heart
18	chr2:74200600-74208200	Weak transcription	Gastric	stomach
19	chr2:74200800-74206000	Weak transcription	Primary B cells from cord blood	blood
20	chr2:74201000-74205600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr2:74202000-74206400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr2:74202200-74206000	Enhancers	Primary T cells from cord blood	blood
23	chr2:74202400-74206000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr2:74203000-74205600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr2:74203000-74205600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr2:74203000-74206200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr2:74203200-74205600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr2:74203200-74205600	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr2:74203200-74206000	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr2:74203800-74208200	Enhancers	Primary T cells fromperipheralblood	blood
31	chr2:74204000-74206200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr2:74204200-74205800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr2:74204200-74206000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr2:74204400-74205800	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr2:74204400-74206400	Enhancers	Fetal Thymus	thymus
36	chr2:74204600-74206000	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr2:74204600-74206200	Weak transcription	K562	blood
38	chr2:74204800-74206200	Enhancers	GM12878-XiMat	blood
39	chr2:74205000-74206000	Enhancers	Dnd41	blood
40	chr2:74205000-74207800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr2:74205200-74206200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr2:74205400-74206000	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr2:74205400-74206400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr2:74205400-74206600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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