Variant report

Variant	rs13403501
Chromosome Location	chr2:74207256-74207257
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:74194837..74202788-chr2:74203103..74212249,15	K562	blood:
2	chr2:74187365..74198553-chr2:74205167..74212961,17	MCF-7	breast:
3	chr2:74207001..74208760-chr2:74424534..74426983,2	MCF-7	breast:
4	chr2:74151695..74161558-chr2:74205273..74215127,19	K562	blood:
5	chr2:74203032..74204674-chr2:74206402..74208026,2	K562	blood:
6	chr2:74151187..74158039-chr2:74203173..74216266,29	MCF-7	breast:
7	chr2:74206459..74210168-chr2:74373577..74376532,3	K562	blood:
8	chr2:74153687..74156890-chr2:74206451..74210129,3	K562	blood:
9	chr2:74147649..74157677-chr2:74203379..74217813,34	MCF-7	breast:
10	chr2:74163103..74165091-chr2:74205169..74208171,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000114956	Chromatin interaction
ENSG00000225439	Chromatin interaction
ENSG00000201876	Chromatin interaction
ENSG00000163170	Chromatin interaction
ENSG00000065911	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10165341	1.00[YRI][hapmap]
rs13387174	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011177	chr2:74167343-74239905	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3584956	chr2:74197109-74317135	Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74198400-74208400	Weak transcription	Aorta	Aorta
2	chr2:74200400-74207600	Weak transcription	Spleen	Spleen
3	chr2:74200600-74208200	Weak transcription	Gastric	stomach
4	chr2:74203800-74208200	Enhancers	Primary T cells fromperipheralblood	blood
5	chr2:74205000-74207800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:74205600-74208000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr2:74205600-74208200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr2:74205600-74208200	Enhancers	Primary hematopoietic stem cells	blood
9	chr2:74205800-74207800	Enhancers	Primary B cells from peripheral blood	blood
10	chr2:74206000-74207400	Flanking Active TSS	Primary T cells from cord blood	blood
11	chr2:74206000-74207400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
12	chr2:74206000-74207400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr2:74206000-74207600	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr2:74206000-74208200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:74206000-74208200	Enhancers	Placenta	Placenta
16	chr2:74206000-74209800	Enhancers	Lung	lung
17	chr2:74206200-74207400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr2:74206200-74207400	Enhancers	Esophagus	oesophagus
19	chr2:74206200-74207400	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr2:74206200-74207400	Flanking Active TSS	GM12878-XiMat	blood
21	chr2:74206200-74207600	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr2:74206200-74207600	Enhancers	K562	blood
23	chr2:74206200-74207800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr2:74206200-74207800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr2:74206200-74208000	Enhancers	Hela-S3	cervix
26	chr2:74206200-74208000	Enhancers	HUVEC	blood vessel
27	chr2:74206200-74208200	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr2:74206200-74208200	Bivalent Enhancer	Fetal Intestine Large	intestine
29	chr2:74206400-74207600	Enhancers	Muscle Satellite Cultured Cells	--
30	chr2:74206400-74207600	Weak transcription	Left Ventricle	heart
31	chr2:74206400-74208400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
32	chr2:74206600-74207400	Enhancers	NH-A	brain
33	chr2:74206600-74207600	Enhancers	Duodenum Mucosa	Duodenum
34	chr2:74206600-74207800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
35	chr2:74206600-74207800	Bivalent Enhancer	HepG2	liver
36	chr2:74206600-74208200	Enhancers	Placenta Amnion	Placenta Amnion
37	chr2:74206600-74208200	Enhancers	HSMM	muscle
38	chr2:74206600-74208400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
39	chr2:74206800-74207400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr2:74206800-74207400	Flanking Active TSS	A549	lung
41	chr2:74206800-74207600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr2:74206800-74207800	Enhancers	Fetal Thymus	thymus
43	chr2:74206800-74208000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr2:74206800-74208000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr2:74206800-74208200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr2:74206800-74208200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr2:74206800-74208200	Enhancers	Stomach Mucosa	stomach
48	chr2:74206800-74208400	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr2:74206800-74208400	Enhancers	Pancreas	Pancrea
50	chr2:74206800-74208400	Enhancers	Right Ventricle	heart

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