Variant report

Variant	rs10165384
Chromosome Location	chr2:209510089-209510090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10497908	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11886633	1.00[MEX][hapmap]
rs12996332	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13005342	0.82[EUR][1000 genomes]
rs13009129	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13032937	0.82[EUR][1000 genomes]
rs16824865	0.82[EUR][1000 genomes]
rs16841488	0.82[EUR][1000 genomes]
rs16841490	0.82[EUR][1000 genomes]
rs16841492	0.82[EUR][1000 genomes]
rs16841494	0.82[EUR][1000 genomes]
rs34303255	0.82[EUR][1000 genomes]
rs34546401	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35962803	0.82[EUR][1000 genomes]
rs61183844	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7561893	0.82[EUR][1000 genomes]
rs7587825	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005292	chr2:209470753-209631662	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv2756959	chr2:209472551-209551952	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2759112	chr2:209472551-209551952	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv875753	chr2:209474223-209517915	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209495000-209512800	Weak transcription	Fetal Kidney	kidney
2	chr2:209508800-209512600	Weak transcription	Fetal Heart	heart
3	chr2:209509200-209510600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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