Variant report
| Variant | rs13009129 |
|---|---|
| Chromosome Location | chr2:209502433-209502434 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:209339603..209341733-chr2:209501873..209504107,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10165384 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10497908 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12996332 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13005342 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs13024405 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs13031408 | 0.90[EUR][1000 genomes] |
| rs13032937 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs13420017 | 0.81[ASN][1000 genomes] |
| rs13421435 | 0.81[ASN][1000 genomes] |
| rs13424993 | 0.81[ASN][1000 genomes] |
| rs13426261 | 0.81[ASN][1000 genomes] |
| rs16824865 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs16841488 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs16841490 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs16841492 | 0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs16841494 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs16841506 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs34303255 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs34546401 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35962803 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs60116276 | 0.81[ASN][1000 genomes] |
| rs61183844 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6435467 | 0.81[ASN][1000 genomes] |
| rs6749585 | 0.81[ASN][1000 genomes] |
| rs7561893 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7587825 | 1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1005292 | chr2:209470753-209631662 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | esv2756959 | chr2:209472551-209551952 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | esv2759112 | chr2:209472551-209551952 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv875753 | chr2:209474223-209517915 | Weak transcription Enhancers Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | esv3322275 | chr2:209500607-209502555 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 6 | esv3348954 | chr2:209500632-209503055 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:209495000-209512800 | Weak transcription | Fetal Kidney | kidney |
| 2 | chr2:209502400-209503400 | Enhancers | K562 | blood |
