Variant report

Variant	rs13024405
Chromosome Location	chr2:209500788-209500789
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:209500439..209502356-chr2:209506551..209509488,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10497908	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12996332	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13005342	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13009129	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13032937	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13420017	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13421435	1.00[ASN][1000 genomes]
rs13424993	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13426261	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16824865	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16841488	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16841490	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16841492	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16841494	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16841506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34303255	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34546401	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35962803	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60116276	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61183844	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6435467	1.00[ASN][1000 genomes]
rs6749585	1.00[ASN][1000 genomes]
rs7561893	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7587825	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005292	chr2:209470753-209631662	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv2756959	chr2:209472551-209551952	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2759112	chr2:209472551-209551952	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv875753	chr2:209474223-209517915	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv3322275	chr2:209500607-209502555	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3348954	chr2:209500632-209503055	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209494600-209502400	Weak transcription	K562	blood
2	chr2:209495000-209512800	Weak transcription	Fetal Kidney	kidney

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