Variant report

Variant	rs6435467
Chromosome Location	chr2:209473267-209473268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10497908	0.81[ASN][1000 genomes]
rs12996332	0.81[ASN][1000 genomes]
rs13005342	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13009129	0.81[ASN][1000 genomes]
rs13024405	1.00[ASN][1000 genomes]
rs13032937	1.00[ASN][1000 genomes]
rs13420017	1.00[ASN][1000 genomes]
rs13421435	1.00[ASN][1000 genomes]
rs13424993	1.00[ASN][1000 genomes]
rs13426261	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16824865	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16841488	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16841490	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16841492	1.00[ASN][1000 genomes]
rs16841494	1.00[ASN][1000 genomes]
rs16841506	1.00[ASN][1000 genomes]
rs34303255	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34546401	0.81[ASN][1000 genomes]
rs35962803	1.00[ASN][1000 genomes]
rs60116276	1.00[ASN][1000 genomes]
rs61183844	0.81[ASN][1000 genomes]
rs6749585	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7561893	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7587825	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005292	chr2:209470753-209631662	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv2756959	chr2:209472551-209551952	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2759112	chr2:209472551-209551952	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209472600-209473600	Enhancers	K562	blood
2	chr2:209473200-209473600	Enhancers	Fetal Brain Male	brain
3	chr2:209473200-209473600	Enhancers	Fetal Brain Female	brain
4	chr2:209473200-209473800	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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