Variant report

Variant	rs10166735
Chromosome Location	chr2:76955812-76955813
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10169851	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10188404	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13408935	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13419696	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28419312	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4322873	0.86[EUR][1000 genomes]
rs4852413	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4853268	0.87[EUR][1000 genomes]
rs4853269	0.87[EUR][1000 genomes]
rs55674026	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55952208	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56078403	0.81[AMR][1000 genomes]
rs57842923	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58134863	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61283380	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7598235	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv582235	chr2:76881210-76997763	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1003325	chr2:76914457-76957491	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv1002481	chr2:76919605-76957491	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv1013202	chr2:76928121-76956494	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	nsv999909	chr2:76928121-76957491	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
6	nsv874318	chr2:76929095-76956302	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	nsv582241	chr2:76935514-76956302	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	nsv1012147	chr2:76936019-76957491	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
9	esv2762679	chr2:76936031-76957088	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
10	nsv515527	chr2:76939575-76956302	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
11	nsv582245	chr2:76939575-76956302	Active TSS Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	nsv582249	chr2:76941049-76956302	Active TSS Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	nsv874319	chr2:76949101-76979415	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76955600-76956000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr2:76955600-76956200	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr2:76955800-76956200	Active TSS	H9 Cell Line	embryonic stem cell
4	chr2:76955800-76956200	Active TSS	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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