Variant report

Variant	rs55674026
Chromosome Location	chr2:76956010-76956011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10166735	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10169851	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10188404	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12232994	0.81[EUR][1000 genomes]
rs13408935	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13419696	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13426139	0.82[ASN][1000 genomes]
rs28419312	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4322873	0.91[EUR][1000 genomes]
rs4571080	0.83[EUR][1000 genomes]
rs4852413	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4853268	0.92[EUR][1000 genomes]
rs4853269	0.92[EUR][1000 genomes]
rs55952208	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56078403	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56083799	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57842923	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58134863	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58242146	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61283380	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7584590	0.82[ASN][1000 genomes]
rs7598235	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs971120	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv582235	chr2:76881210-76997763	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1003325	chr2:76914457-76957491	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv1002481	chr2:76919605-76957491	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv1013202	chr2:76928121-76956494	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	nsv999909	chr2:76928121-76957491	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
6	nsv874318	chr2:76929095-76956302	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	nsv582241	chr2:76935514-76956302	Weak transcription Active TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	nsv1012147	chr2:76936019-76957491	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
9	esv2762679	chr2:76936031-76957088	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
10	nsv515527	chr2:76939575-76956302	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
11	nsv582245	chr2:76939575-76956302	Active TSS Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	nsv582249	chr2:76941049-76956302	Active TSS Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	nsv874319	chr2:76949101-76979415	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76955600-76956200	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr2:76955800-76956200	Active TSS	H9 Cell Line	embryonic stem cell
3	chr2:76955800-76956200	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr2:76956000-76957800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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