Variant report

Variant	rs10166998
Chromosome Location	chr2:142804994-142804995
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10176462	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10177469	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10193349	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10469550	1.00[AMR][1000 genomes]
rs12691633	1.00[MEX][hapmap]
rs13382560	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13395874	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13396189	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13405497	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13418339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13425995	1.00[TSI][hapmap]
rs13432503	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16848146	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56141936	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57153124	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60571278	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73963423	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73963448	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7590435	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997274	chr2:142760393-143599193	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv526107	chr2:142768518-142884248	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142796200-142809800	Weak transcription	Brain Substantia Nigra	brain
2	chr2:142800400-142810200	Weak transcription	Brain Anterior Caudate	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links