Variant report

Variant	rs13382560
Chromosome Location	chr2:142822265-142822266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10166998	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10176462	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10177469	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10193349	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10469550	0.90[AMR][1000 genomes]
rs13395874	1.00[EUR][1000 genomes]
rs13396189	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13405497	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13418339	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13432503	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16848146	0.81[EUR][1000 genomes]
rs56141936	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57153124	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60571278	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73963423	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73963448	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7590435	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997274	chr2:142760393-143599193	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv526107	chr2:142768518-142884248	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875253	chr2:142805006-142855291	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142821400-142823000	Enhancers	Brain Anterior Caudate	brain
2	chr2:142821400-142823000	Enhancers	Brain Hippocampus Middle	brain
3	chr2:142821800-142822600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:142821800-142824600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:142822200-142822800	Active TSS	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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