Variant report

Variant	rs1016806
Chromosome Location	chr6:120929573-120929574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11753827	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1203068	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1203081	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1212906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17629983	0.86[AMR][1000 genomes]
rs1933868	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1933869	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2788668	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753290	chr6:120309301-120979301	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	esv2752474	chr6:120309301-120982301	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv428495	chr6:120861159-120954224	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3473237	chr6:120928547-120929677	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
5	esv3473239	chr6:120928571-120929677	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
6	esv3473238	chr6:120928611-120929619	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
7	esv17674	chr6:120928642-120929589	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120928800-120929600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links