Variant report

Variant	esv3473238
Chromosome Location	chr6:120928611-120929619
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 111 )

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs562809911	chr6:120928614-120928615	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs531470767	chr6:120928628-120928629	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs558990391	chr6:120928645-120928646	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs569756771	chr6:120928671-120928672	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs368888052	chr6:120928682-120928683	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs35812460	chr6:120928694-120928695	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs113722884	chr6:120928744-120928745	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs58380556	chr6:120928751-120928752	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs551416634	chr6:120928768-120928769	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs181271887	chr6:120928787-120928788	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs376223783	chr6:120928805-120928806	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs527260596	chr6:120928860-120928861	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs547553291	chr6:120928870-120928871	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs567244079	chr6:120928884-120928885	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs538980263	chr6:120928934-120928935	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs74636903	chr6:120928945-120928946	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs550068924	chr6:120928947-120928948	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs570345155	chr6:120928966-120928967	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs538919181	chr6:120928981-120928982	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs377179842	chr6:120928985-120928986	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs187137838	chr6:120928990-120928991	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs558804363	chr6:120929037-120929038	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs572142648	chr6:120929071-120929072	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs558869258	chr6:120929102-120929103	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs142176997	chr6:120929128-120929129	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs555093027	chr6:120929217-120929218	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs9398587	chr6:120929291-120929292	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs9398588	chr6:120929426-120929427	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs79560739	chr6:120929491-120929492	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs1016806	chr6:120929573-120929574	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:111)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Burkitt''s lymphoma	18698080	CNVD
Ovarian cancer	21720365	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21785460	CNVD
Prostate cancer	16461572	CNVD
Neurocytoma	17123091	CNVD
Cancer	20164920	CNVD
Breast cancer	21364760	CNVD
Chordoma	21602918	CNVD
Kartagener syndrome	16639409	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17133270	CNVD
Follicular lymphoma	18703704	CNVD
Mental retardation	17621639	CNVD
Hypoplastic	20877625	CNVD
Hypotonia	20877625	CNVD
Mental retardation	20877625	CNVD
Microcephaly	20877625	CNVD
brachycephaly	20877625	CNVD
epicanthic folds	20877625	CNVD
micrognathia	20877625	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Metastatic melanoma	18483359	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Breast cancer	18698023	CNVD
Mental retardation	18854857	CNVD
Leukemia	18688285	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
Liver carcinoma	19366792	CNVD
Breast cancer	21611746	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120927600-120929000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr6:120928800-120929600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:120929600-120931400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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