Variant report
| Variant | rs9398587 |
|---|---|
| Chromosome Location | chr6:120929291-120929292 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1203069 | 1.00[ASN][1000 genomes] |
| rs1203071 | 1.00[ASN][1000 genomes] |
| rs1203072 | 1.00[ASN][1000 genomes] |
| rs1203078 | 1.00[ASN][1000 genomes] |
| rs1203089 | 1.00[ASN][1000 genomes] |
| rs1203092 | 0.95[ASN][1000 genomes] |
| rs2788665 | 0.86[ASN][1000 genomes] |
| rs28497554 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62426588 | 0.89[ASN][1000 genomes] |
| rs6569151 | 0.85[ASN][1000 genomes] |
| rs6921749 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9372612 | 0.89[ASN][1000 genomes] |
| rs9372613 | 0.89[ASN][1000 genomes] |
| rs9372622 | 1.00[ASN][1000 genomes] |
| rs9385162 | 0.89[ASN][1000 genomes] |
| rs9385168 | 1.00[ASN][1000 genomes] |
| rs9387838 | 0.89[ASN][1000 genomes] |
| rs9387854 | 1.00[ASN][1000 genomes] |
| rs9387855 | 0.95[ASN][1000 genomes] |
| rs9387856 | 1.00[ASN][1000 genomes] |
| rs9398588 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9401285 | 0.89[ASN][1000 genomes] |
| rs9401291 | 0.89[ASN][1000 genomes] |
| rs9401306 | 0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2753290 | chr6:120309301-120979301 | Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv2752474 | chr6:120309301-120982301 | Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS | TF binding regionChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv428495 | chr6:120861159-120954224 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | esv3473237 | chr6:120928547-120929677 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
| 5 | esv3473239 | chr6:120928571-120929677 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
| 6 | esv3473238 | chr6:120928611-120929619 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | n/a |
| 7 | esv17674 | chr6:120928642-120929589 | Enhancers | n/a | n/a | inside rSNPs | n/a |
| 8 | esv3473240 | chr6:120928682-120929536 | Enhancers | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:120928800-120929600 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
