Variant report

Variant	rs9401291
Chromosome Location	chr6:120867563-120867564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1203069	0.89[ASN][1000 genomes]
rs1203071	0.89[ASN][1000 genomes]
rs1203072	0.89[ASN][1000 genomes]
rs1203078	0.89[ASN][1000 genomes]
rs1203089	0.89[ASN][1000 genomes]
rs1203092	0.85[ASN][1000 genomes]
rs28497554	0.89[ASN][1000 genomes]
rs62426588	1.00[ASN][1000 genomes]
rs9372612	1.00[ASN][1000 genomes]
rs9372613	1.00[ASN][1000 genomes]
rs9372622	0.89[ASN][1000 genomes]
rs9385162	1.00[ASN][1000 genomes]
rs9385168	0.89[ASN][1000 genomes]
rs9387838	1.00[ASN][1000 genomes]
rs9387854	0.89[ASN][1000 genomes]
rs9387855	0.85[ASN][1000 genomes]
rs9387856	0.89[ASN][1000 genomes]
rs9398587	0.89[ASN][1000 genomes]
rs9398588	0.89[ASN][1000 genomes]
rs9401285	1.00[ASN][1000 genomes]
rs9401306	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753290	chr6:120309301-120979301	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	esv2752474	chr6:120309301-120982301	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1021744	chr6:120786615-120869190	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604569	chr6:120795089-120887820	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1031204	chr6:120847713-120870538	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
6	nsv428495	chr6:120861159-120954224	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120866600-120869200	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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