Variant report
| Variant | rs62426588 |
|---|---|
| Chromosome Location | chr6:120850587-120850588 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1203069 | 0.89[ASN][1000 genomes] |
| rs1203071 | 0.89[ASN][1000 genomes] |
| rs1203072 | 0.89[ASN][1000 genomes] |
| rs1203078 | 0.89[ASN][1000 genomes] |
| rs1203089 | 0.89[ASN][1000 genomes] |
| rs1203092 | 0.85[ASN][1000 genomes] |
| rs2358053 | 0.87[EUR][1000 genomes] |
| rs2358054 | 0.87[EUR][1000 genomes] |
| rs28497554 | 0.89[ASN][1000 genomes] |
| rs62426587 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62442957 | 0.87[EUR][1000 genomes] |
| rs62442958 | 0.87[EUR][1000 genomes] |
| rs62443133 | 0.89[EUR][1000 genomes] |
| rs62444861 | 0.87[EUR][1000 genomes] |
| rs9372612 | 1.00[ASN][1000 genomes] |
| rs9372613 | 1.00[ASN][1000 genomes] |
| rs9372622 | 0.89[ASN][1000 genomes] |
| rs9385162 | 1.00[ASN][1000 genomes] |
| rs9385168 | 0.89[ASN][1000 genomes] |
| rs9387838 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9387854 | 0.89[ASN][1000 genomes] |
| rs9387855 | 0.85[ASN][1000 genomes] |
| rs9387856 | 0.89[ASN][1000 genomes] |
| rs9398587 | 0.89[ASN][1000 genomes] |
| rs9398588 | 0.89[ASN][1000 genomes] |
| rs9401285 | 1.00[ASN][1000 genomes] |
| rs9401291 | 1.00[ASN][1000 genomes] |
| rs9401306 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2753290 | chr6:120309301-120979301 | Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv2752474 | chr6:120309301-120982301 | Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS | TF binding regionChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv2755321 | chr6:120726829-120855431 | Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1021744 | chr6:120786615-120869190 | Enhancers Active TSS Flanking Active TSS Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv604569 | chr6:120795089-120887820 | Enhancers Active TSS Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv1031204 | chr6:120847713-120870538 | Weak transcription Enhancers | TF binding region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:120849600-120850600 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
