Variant report

Variant	rs10168377
Chromosome Location	chr2:172961951-172961952
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:172901825..172905111-chr2:172958470..172962198,5	MCF-7	breast:
2	chr2:172675309..172677546-chr2:172961280..172963314,2	K562	blood:
3	chr2:172862808..172868920-chr2:172961807..172971063,13	K562	blood:
4	chr2:172914458..172918465-chr2:172959410..172965426,7	MCF-7	breast:
5	chr2:172863799..172868193-chr2:172958935..172963899,6	K562	blood:
6	chr2:172854755..172858699-chr2:172956896..172962268,5	MCF-7	breast:
7	chr2:172912138..172914042-chr2:172960241..172963066,2	MCF-7	breast:
8	chr2:172888478..172891307-chr2:172961439..172963560,3	K562	blood:
9	chr2:172777776..172780880-chr2:172960804..172964845,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000115840	Chromatin interaction
ENSG00000128708	Chromatin interaction
ENSG00000172878	Chromatin interaction

rs_ID	r²[population]
rs10204520	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12468332	0.94[AMR][1000 genomes]
rs12473549	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28619352	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172954400-172962600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
2	chr2:172958400-172962400	Weak transcription	K562	blood
3	chr2:172958400-172962600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr2:172958600-172962000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
5	chr2:172958600-172962400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
6	chr2:172958800-172962000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
7	chr2:172959000-172962200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:172959000-172962400	Bivalent Enhancer	Fetal Brain Male	brain
9	chr2:172959000-172962400	Bivalent Enhancer	Fetal Heart	heart
10	chr2:172959400-172962000	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
11	chr2:172959400-172962800	Flanking Bivalent TSS/Enh	HepG2	liver
12	chr2:172959800-172962200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr2:172959800-172962200	Flanking Bivalent TSS/Enh	Dnd41	blood
14	chr2:172960200-172962000	Bivalent Enhancer	Small Intestine	intestine
15	chr2:172960200-172962800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr2:172960200-172962800	Bivalent Enhancer	Fetal Thymus	thymus
17	chr2:172960200-172963600	Bivalent Enhancer	Esophagus	oesophagus
18	chr2:172960400-172962400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:172960400-172962400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
20	chr2:172960400-172962400	Bivalent Enhancer	Spleen	Spleen
21	chr2:172960400-172962400	Flanking Active TSS	NHEK	skin
22	chr2:172960400-172962600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr2:172960400-172962600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr2:172960400-172962800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr2:172960400-172964600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr2:172960400-172965400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
27	chr2:172960400-172966200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
28	chr2:172960400-172966800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
29	chr2:172960600-172962000	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
30	chr2:172960600-172962200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
31	chr2:172960600-172966400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
32	chr2:172960800-172962200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
33	chr2:172960800-172962200	Flanking Active TSS	HSMM	muscle
34	chr2:172960800-172962400	Bivalent Enhancer	Liver	Liver
35	chr2:172960800-172962600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
36	chr2:172960800-172963200	Enhancers	A549	lung
37	chr2:172960800-172966400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
38	chr2:172961000-172962000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr2:172961000-172962200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr2:172961000-172962200	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
41	chr2:172961000-172962200	Bivalent Enhancer	Left Ventricle	heart
42	chr2:172961000-172962200	Active TSS	Osteobl	bone
43	chr2:172961000-172962400	Bivalent Enhancer	Lung	lung
44	chr2:172961000-172962600	Weak transcription	Hela-S3	cervix
45	chr2:172961000-172963600	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
46	chr2:172961200-172962000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
47	chr2:172961200-172962000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
48	chr2:172961200-172962000	Flanking Active TSS	HMEC	breast
49	chr2:172961200-172962000	Active TSS	NHDF-Ad	bronchial
50	chr2:172961200-172962200	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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