Variant report

Variant	rs12468332
Chromosome Location	chr2:172959622-172959623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:28)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:172949623..172950759-chr2:172959345..172960595,4	MCF-7	breast:
2	chr2:172873033..172874674-chr2:172958655..172960495,2	MCF-7	breast:
3	chr2:172900609..172903455-chr2:172958625..172961122,3	MCF-7	breast:
4	chr2:172959551..172961789-chr2:172992216..172994787,2	MCF-7	breast:
5	chr2:172750557..172752237-chr2:172957571..172960276,3	MCF-7	breast:
6	chr2:172801972..172804580-chr2:172958176..172960295,2	MCF-7	breast:
7	chr2:172796815..172799164-chr2:172958912..172961164,2	MCF-7	breast:
8	chr2:172901825..172905111-chr2:172958470..172962198,5	MCF-7	breast:
9	chr2:172853366..172855410-chr2:172959572..172961641,2	MCF-7	breast:
10	chr2:172925892..172927403-chr2:172958598..172960758,2	MCF-7	breast:
11	chr2:172860722..172865084-chr2:172957574..172960458,3	K562	blood:
12	chr2:172448771..172450510-chr2:172958364..172961355,2	MCF-7	breast:
13	chr2:172813074..172816738-chr2:172958355..172960907,4	MCF-7	breast:
14	chr2:172914458..172918465-chr2:172959410..172965426,7	MCF-7	breast:
15	chr2:172814641..172816284-chr2:172958684..172960276,2	MCF-7	breast:
16	chr2:172863979..172866612-chr2:172959043..172961614,4	MCF-7	breast:
17	chr2:172863799..172868193-chr2:172958935..172963899,6	K562	blood:
18	chr2:172428308..172430928-chr2:172958579..172961359,2	MCF-7	breast:
19	chr2:172914690..172917285-chr2:172958653..172961540,2	MCF-7	breast:
20	chr2:172886299..172888193-chr2:172958396..172961013,3	MCF-7	breast:
21	chr2:172854755..172858699-chr2:172956896..172962268,5	MCF-7	breast:
22	chr1:16838792..16840790-chr2:172958467..172960036,2	MCF-7	breast:
23	chr2:172958416..172960183-chr2:172997727..172999543,2	MCF-7	breast:
24	chr2:172911212..172913559-chr2:172957702..172960003,2	MCF-7	breast:
25	chr17:56707426..56710151-chr2:172959515..172961134,2	MCF-7	breast:
26	chr2:172865319..172867165-chr2:172958797..172961537,3	MCF-7	breast:
27	chr2:172777995..172782121-chr2:172958616..172961683,5	MCF-7	breast:
28	chr1:11332213..11333767-chr2:172959047..172961458,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000144355	Chromatin interaction
ENSG00000115840	Chromatin interaction
ENSG00000120942	Chromatin interaction
ENSG00000172878	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000206652	Chromatin interaction
ENSG00000128708	Chromatin interaction

rs_ID	r²[population]
rs10168377	0.94[AMR][1000 genomes]
rs12473549	0.94[AMR][1000 genomes]
rs28619352	0.88[AMR][1000 genomes]

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172949800-172960800	Bivalent/Poised TSS	Fetal Brain Female	brain
2	chr2:172954400-172962600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
3	chr2:172958000-172959800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
4	chr2:172958000-172960600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:172958200-172959800	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
6	chr2:172958200-172959800	Bivalent Enhancer	Fetal Thymus	thymus
7	chr2:172958400-172959800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
8	chr2:172958400-172962400	Weak transcription	K562	blood
9	chr2:172958400-172962600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr2:172958600-172959800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
11	chr2:172958600-172960400	Active TSS	Aorta	Aorta
12	chr2:172958600-172962000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
13	chr2:172958600-172962400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
14	chr2:172958800-172959800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:172958800-172959800	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
16	chr2:172958800-172960000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr2:172958800-172962000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
18	chr2:172959000-172959800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
19	chr2:172959000-172959800	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
20	chr2:172959000-172959800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
21	chr2:172959000-172959800	Active TSS	Right Atrium	heart
22	chr2:172959000-172960000	Bivalent Enhancer	Liver	Liver
23	chr2:172959000-172960000	Bivalent Enhancer	Left Ventricle	heart
24	chr2:172959000-172960400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr2:172959000-172960600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
26	chr2:172959000-172960600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
27	chr2:172959000-172960600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr2:172959000-172960800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
29	chr2:172959000-172961000	Active TSS	Hela-S3	cervix
30	chr2:172959000-172961400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
31	chr2:172959000-172961800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
32	chr2:172959000-172962200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr2:172959000-172962400	Bivalent Enhancer	Fetal Brain Male	brain
34	chr2:172959000-172962400	Bivalent Enhancer	Fetal Heart	heart
35	chr2:172959200-172959800	Active TSS	Muscle Satellite Cultured Cells	--
36	chr2:172959200-172960000	Bivalent Enhancer	Primary B cells from cord blood	blood
37	chr2:172959200-172960000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr2:172959200-172960000	Bivalent Enhancer	Small Intestine	intestine
39	chr2:172959200-172960200	Bivalent/Poised TSS	Thymus	Thymus
40	chr2:172959200-172960200	Bivalent/Poised TSS	NHEK	skin
41	chr2:172959200-172960400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr2:172959200-172960400	Active TSS	A549	lung
43	chr2:172959200-172960600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr2:172959200-172960600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
45	chr2:172959200-172960600	Active TSS	Osteobl	bone
46	chr2:172959200-172960800	Active TSS	HSMM	muscle
47	chr2:172959200-172961800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr2:172959400-172959800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
49	chr2:172959400-172959800	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr2:172959400-172959800	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links