Variant report

Variant	rs10168901
Chromosome Location	chr2:76479233-76479234
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11673856	0.84[ASN][1000 genomes]
rs11678895	0.84[ASN][1000 genomes]
rs11679728	0.89[ASN][1000 genomes]
rs12996043	0.89[ASN][1000 genomes]
rs13002280	0.84[ASN][1000 genomes]
rs17753876	0.84[CEU][hapmap]
rs1916870	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34236297	0.84[ASN][1000 genomes]
rs35787624	0.84[ASN][1000 genomes]
rs6761061	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7565818	0.89[ASN][1000 genomes]
rs7572341	0.84[ASN][1000 genomes]
rs7609022	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs997292	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874311	chr2:76389455-76492999	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv874312	chr2:76430941-76500077	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76476600-76484800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:76477000-76480800	Weak transcription	Pancreas	Pancrea
3	chr2:76478000-76483600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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