Variant report

Variant	rs12996043
Chromosome Location	chr2:76419240-76419241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10168901	0.89[ASN][1000 genomes]
rs10188424	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10205242	0.89[ASN][1000 genomes]
rs11673856	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11678895	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11679728	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11690678	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12713863	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12987316	0.89[ASN][1000 genomes]
rs12997508	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13002280	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13030138	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13409722	0.89[ASN][1000 genomes]
rs1608587	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17700671	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17750689	0.89[ASN][1000 genomes]
rs17750877	0.89[ASN][1000 genomes]
rs17753876	0.84[CEU][hapmap]
rs1916870	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34236297	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34743837	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35475961	0.89[ASN][1000 genomes]
rs35787624	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35861585	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6547046	0.89[ASN][1000 genomes]
rs67496128	0.84[EUR][1000 genomes]
rs6761061	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs68152182	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71418796	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71418798	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71420904	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs744235	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7565818	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7572341	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7609022	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs997292	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834265	chr2:76275611-76450728	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv999645	chr2:76317006-76451354	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv874311	chr2:76389455-76492999	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76419000-76419800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:76419200-76420800	Enhancers	HepG2	liver

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