Variant report

Variant	rs13030138
Chromosome Location	chr2:76334588-76334589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10188424	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10205242	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11673856	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11678895	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11679728	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11690678	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12713863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12987316	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12996043	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12997508	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13002280	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13409722	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1608587	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17700671	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17750689	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17750877	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34236297	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34743837	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35475961	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35787624	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35861585	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547046	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6746028	0.81[AFR][1000 genomes]
rs67496128	0.90[EUR][1000 genomes]
rs68152182	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71418796	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71418798	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71420904	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744235	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7565818	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7572341	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7609022	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834265	chr2:76275611-76450728	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv999645	chr2:76317006-76451354	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv523475	chr2:76333150-76343190	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76332200-76337400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:76334000-76334800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:76334400-76334600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:76334400-76338600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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