Variant report

Variant	rs35475961
Chromosome Location	chr2:76310280-76310281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:76309108..76311658-chr2:76313457..76316023,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10188424	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10205242	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11673856	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11678895	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11679728	0.89[ASN][1000 genomes]
rs11690678	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12713863	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12987316	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12996043	0.89[ASN][1000 genomes]
rs12997508	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13002280	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13030138	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13409722	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1608587	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17700671	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17750689	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17750877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34236297	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34743837	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35787624	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35861585	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547046	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67496128	0.89[EUR][1000 genomes]
rs68152182	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71418796	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71418798	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71420904	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744235	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7565818	0.89[ASN][1000 genomes]
rs7572341	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834265	chr2:76275611-76450728	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76308000-76311800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:76309400-76310400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:76310000-76311000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr2:76310000-76311600	Enhancers	HUES48 Cell Line	embryonic stem cell

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