Variant report

Variant	rs1016907
Chromosome Location	chr13:92913851-92913852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12864515	0.89[AMR][1000 genomes]
rs12866518	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12870067	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12873537	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12873744	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12874073	0.89[AMR][1000 genomes]
rs1556343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34536711	0.89[AMR][1000 genomes]
rs34998773	0.89[AMR][1000 genomes]
rs35927186	1.00[EUR][1000 genomes]
rs71432004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71432006	0.89[AMR][1000 genomes]
rs71432007	0.89[AMR][1000 genomes]
rs9516033	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9516036	0.84[AMR][1000 genomes]
rs9516037	0.89[AMR][1000 genomes]
rs9516038	0.84[AMR][1000 genomes]
rs9516047	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9516048	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9516049	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9516050	0.89[AMR][1000 genomes]
rs9516056	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9516057	0.89[AMR][1000 genomes]
rs9523586	0.89[AMR][1000 genomes]
rs9523602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9523603	0.89[AMR][1000 genomes]
rs9523605	0.89[AMR][1000 genomes]
rs9523606	0.89[AMR][1000 genomes]
rs9523607	0.89[AMR][1000 genomes]
rs9523608	0.89[AMR][1000 genomes]
rs9523609	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9523610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9523611	0.89[AMR][1000 genomes]
rs9523612	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1035365	chr13:92805325-92926114	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv456067	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv562726	chr13:92868073-92967664	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900902	chr13:92884370-92942274	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv2753357	chr13:92903199-93026399	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92912800-92917600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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