Variant report

Variant	rs1017037
Chromosome Location	chr7:79105489-79105490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1034797	1.00[ASN][1000 genomes]
rs17152506	0.81[CHB][hapmap]
rs17152525	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs17152543	0.98[ASN][1000 genomes]
rs17152573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17152586	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17424004	0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs2079385	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2107992	0.86[CHB][hapmap]
rs2158707	0.86[CHB][hapmap]
rs2365420	0.89[AFR][1000 genomes]
rs3884514	0.85[CHB][hapmap]
rs55817471	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55965206	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56169545	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56234137	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56252871	0.91[AFR][1000 genomes]
rs59968994	1.00[ASN][1000 genomes]
rs60059862	0.92[ASN][1000 genomes]
rs60262438	1.00[ASN][1000 genomes]
rs6949250	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6950987	0.96[ASN][1000 genomes]
rs6953105	0.86[CHB][hapmap]
rs73147479	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73149310	1.00[ASN][1000 genomes]
rs73149323	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73149326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73151318	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73704836	0.87[AFR][1000 genomes]
rs73704837	0.87[AFR][1000 genomes]
rs73704838	0.87[AFR][1000 genomes]
rs73704840	0.87[AFR][1000 genomes]
rs7808217	0.98[ASN][1000 genomes]
rs9640776	0.86[CHB][hapmap]
rs9641583	0.86[CHB][hapmap]
rs9641588	0.86[CHB][hapmap]
rs9641589	0.86[CHB][hapmap]
rs980354	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs991857	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv888515	chr7:78987060-79221707	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv427792	chr7:79039802-79253373	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv970902	chr7:79046674-79175610	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv888516	chr7:79086317-79221707	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv428175	chr7:79096786-79253373	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79088000-79109600	Weak transcription	Aorta	Aorta
2	chr7:79089200-79109600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:79105200-79107400	Weak transcription	Fetal Brain Male	brain

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