Variant report

Variant	rs17152525
Chromosome Location	chr7:79083980-79083981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1017037	0.94[ASN][1000 genomes]
rs1034797	0.94[ASN][1000 genomes]
rs17152496	0.82[JPT][hapmap]
rs17152506	0.82[JPT][hapmap]
rs17152543	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17152573	0.91[ASN][1000 genomes]
rs17152586	0.88[ASN][1000 genomes]
rs56234137	0.93[ASN][1000 genomes]
rs59968994	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60059862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60262438	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6949250	0.89[ASN][1000 genomes]
rs6950987	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73149310	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73149323	0.91[ASN][1000 genomes]
rs73149326	0.91[ASN][1000 genomes]
rs7808217	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs980354	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv888515	chr7:78987060-79221707	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv427792	chr7:79039802-79253373	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv970902	chr7:79046674-79175610	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79079800-79084600	Active TSS	NHLF	lung
2	chr7:79080200-79084000	Active TSS	Brain Anterior Caudate	brain
3	chr7:79080400-79084400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:79080400-79084600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:79080600-79084200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:79080600-79084400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:79080800-79084000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:79080800-79084000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:79080800-79084400	Active TSS	Brain Hippocampus Middle	brain
10	chr7:79080800-79084400	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr7:79080800-79084600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:79080800-79084600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:79080800-79084600	Active TSS	NHDF-Ad	bronchial
14	chr7:79081000-79084000	Active TSS	Rectal Smooth Muscle	rectum
15	chr7:79081000-79084200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
16	chr7:79081000-79084200	Active TSS	Placenta Amnion	Placenta Amnion
17	chr7:79081000-79084200	Bivalent/Poised TSS	HepG2	liver
18	chr7:79081000-79084400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
19	chr7:79081000-79084400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:79081000-79084400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
21	chr7:79081000-79084400	Active TSS	Brain Substantia Nigra	brain
22	chr7:79081000-79084400	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr7:79081000-79084400	Active TSS	Fetal Stomach	stomach
24	chr7:79081000-79084400	Active TSS	Left Ventricle	heart
25	chr7:79081000-79084400	Active TSS	Ovary	ovary
26	chr7:79081000-79084400	Active TSS	Right Ventricle	heart
27	chr7:79081000-79084600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
28	chr7:79081000-79084600	Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr7:79081000-79084600	Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr7:79081000-79084800	Active TSS	Aorta	Aorta
31	chr7:79081000-79084800	Active TSS	Right Atrium	heart
32	chr7:79081200-79084000	Active TSS	Colon Smooth Muscle	Colon
33	chr7:79081200-79084000	Active TSS	Fetal Lung	lung
34	chr7:79081200-79084200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr7:79081200-79084200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr7:79081200-79084200	Active TSS	Psoas Muscle	Psoas
37	chr7:79081200-79084400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr7:79081200-79084400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
39	chr7:79081200-79084400	Active TSS	Brain Angular Gyrus	brain
40	chr7:79081200-79084600	Active TSS	Brain Cingulate Gyrus	brain
41	chr7:79081400-79084000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr7:79081400-79084000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
43	chr7:79081400-79084200	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr7:79081400-79084200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr7:79081400-79084200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
46	chr7:79081400-79084200	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
47	chr7:79081400-79084400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
48	chr7:79081400-79084400	Active TSS	Muscle Satellite Cultured Cells	--
49	chr7:79081400-79086200	Active TSS	Fetal Kidney	kidney
50	chr7:79081600-79084200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum

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