Variant report

Variant	rs10172087
Chromosome Location	chr2:98833594-98833595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:98831892..98834462-chr2:98838599..98840711,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10181000	0.82[CHB][hapmap]
rs10190336	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10199476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202618	0.80[ASN][1000 genomes]
rs10203437	0.80[ASN][1000 genomes]
rs11124096	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11124107	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs11124119	0.87[ASN][1000 genomes]
rs11124121	0.91[ASN][1000 genomes]
rs11673807	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11679920	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11889349	1.00[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs11891512	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11895654	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11901562	0.86[ASN][1000 genomes]
rs12478763	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs12478769	0.96[ASN][1000 genomes]
rs12622324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12624294	0.84[EUR][1000 genomes]
rs12712256	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12993718	0.96[ASN][1000 genomes]
rs12993818	1.00[ASN][1000 genomes]
rs12999985	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs13013876	0.96[ASN][1000 genomes]
rs13014142	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs13033263	0.96[ASN][1000 genomes]
rs13394706	0.82[CHB][hapmap]
rs1451251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466944	1.00[CHB][hapmap]
rs1504679	0.80[ASN][1000 genomes]
rs17427684	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17428056	0.84[EUR][1000 genomes]
rs17429208	0.87[CHB][hapmap]
rs17493788	0.84[EUR][1000 genomes]
rs1875880	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2102270	0.87[CHB][hapmap]
rs2122756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202387	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2221416	1.00[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs2292118	0.88[CHB][hapmap]
rs2292119	1.00[CHB][hapmap]
rs4374424	1.00[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs4389366	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4455212	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs4477970	0.88[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4479470	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs4494805	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4535095	0.91[ASN][1000 genomes]
rs4608580	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4632400	1.00[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs4851122	0.86[ASN][1000 genomes]
rs4851123	0.80[ASN][1000 genomes]
rs4851935	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4851951	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs4851952	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4851954	0.84[ASN][1000 genomes]
rs4851955	0.80[ASN][1000 genomes]
rs6543419	1.00[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs6715989	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs6725543	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs6743279	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6747344	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6747410	0.87[CHB][hapmap]
rs6752440	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6754222	0.82[CHB][hapmap]
rs72933220	0.84[EUR][1000 genomes]
rs7574218	0.96[ASN][1000 genomes]
rs7578802	1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes]
rs7598554	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7601049	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7601503	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7606220	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs937726	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1004082	chr2:98792256-98967681	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv535833	chr2:98792256-98967681	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv582513	chr2:98829237-98869914	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98829000-98835000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:98832800-98833600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:98832800-98833800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:98833000-98834000	Enhancers	HMEC	breast
5	chr2:98833200-98833600	Weak transcription	Gastric	stomach

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