Variant report

Variant	rs7601503
Chromosome Location	chr2:98821749-98821750
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr2:98821718-98821918	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ATP5BP1	TF binding region

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10172087	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10190336	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10199476	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202618	0.80[ASN][1000 genomes]
rs10203437	0.80[ASN][1000 genomes]
rs11124096	1.00[ASN][1000 genomes]
rs11124119	0.87[ASN][1000 genomes]
rs11124121	0.91[ASN][1000 genomes]
rs11889349	0.96[ASN][1000 genomes]
rs11891512	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11895654	1.00[ASN][1000 genomes]
rs11901562	0.86[ASN][1000 genomes]
rs12478763	0.96[ASN][1000 genomes]
rs12478769	0.96[ASN][1000 genomes]
rs12622324	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12712256	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12993718	0.96[ASN][1000 genomes]
rs12993818	1.00[ASN][1000 genomes]
rs13013876	0.96[ASN][1000 genomes]
rs13033263	0.96[ASN][1000 genomes]
rs1451251	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1504679	0.80[ASN][1000 genomes]
rs17427684	0.80[ASN][1000 genomes]
rs1875880	0.80[ASN][1000 genomes]
rs2122756	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202387	0.80[ASN][1000 genomes]
rs2221416	0.80[ASN][1000 genomes]
rs4374424	0.96[ASN][1000 genomes]
rs4389366	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4455212	0.91[ASN][1000 genomes]
rs4477970	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4479470	0.96[ASN][1000 genomes]
rs4494805	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4535095	0.91[ASN][1000 genomes]
rs4632400	0.96[ASN][1000 genomes]
rs4851122	0.86[ASN][1000 genomes]
rs4851123	0.80[ASN][1000 genomes]
rs4851935	0.95[ASN][1000 genomes]
rs4851952	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4851954	0.84[ASN][1000 genomes]
rs4851955	0.80[ASN][1000 genomes]
rs6543419	0.96[ASN][1000 genomes]
rs6743279	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6747344	1.00[ASN][1000 genomes]
rs6752440	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7574218	0.96[ASN][1000 genomes]
rs7578802	0.96[ASN][1000 genomes]
rs7598554	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs937726	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521568	chr2:98403683-98826203	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv518056	chr2:98586842-99156296	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1004082	chr2:98792256-98967681	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv535833	chr2:98792256-98967681	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98821000-98822600	Weak transcription	Aorta	Aorta

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