The 2.0 version of rSNPBase

Variant report

Variant rs10172589
Chromosome Location chr2:180019779-180019780
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:179973400-180030200 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr2:179975800-180047600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr2:179977400-180049000 Weak transcription HSMMtube muscle
4 chr2:179980000-180038800 Weak transcription HMEC breast
5 chr2:179980000-180056800 Weak transcription HSMM muscle
6 chr2:179985000-180025600 Weak transcription Fetal Intestine Small intestine
7 chr2:179986600-180030400 Weak transcription HUES64 Cell Line embryonic stem cell
8 chr2:179991600-180043200 Weak transcription Psoas Muscle Psoas
9 chr2:179996200-180047600 Weak transcription NH-A brain
10 chr2:179998000-180060600 Weak transcription Right Ventricle heart
11 chr2:180002400-180030200 Weak transcription HUES48 Cell Line embryonic stem cell
12 chr2:180003200-180039800 Weak transcription Brain Germinal Matrix brain
13 chr2:180004800-180046000 Weak transcription Spleen Spleen
14 chr2:180005000-180028800 Weak transcription Hela-S3 cervix
15 chr2:180005600-180040200 Weak transcription Brain Cingulate Gyrus brain
16 chr2:180005600-180044400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr2:180005600-180044400 Weak transcription Esophagus oesophagus
18 chr2:180005800-180030200 Weak transcription Thymus Thymus
19 chr2:180005800-180043200 Weak transcription Fetal Brain Male brain
20 chr2:180005800-180053600 Weak transcription Primary T cells from cord blood blood
21 chr2:180006000-180030600 Weak transcription Fetal Muscle Trunk muscle
22 chr2:180006000-180044600 Weak transcription Pancreas Pancrea
23 chr2:180006200-180031400 Weak transcription Brain Hippocampus Middle brain
24 chr2:180006200-180031400 Weak transcription Fetal Brain Female brain
25 chr2:180006400-180030200 Weak transcription Fetal Muscle Leg muscle
26 chr2:180006600-180042000 Weak transcription Brain Substantia Nigra brain
27 chr2:180006600-180051000 Weak transcription HUVEC blood vessel
28 chr2:180006800-180031600 Weak transcription Brain Anterior Caudate brain
29 chr2:180006800-180054600 Weak transcription Rectal Mucosa Donor 31 rectum
30 chr2:180007200-180028600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
31 chr2:180007400-180035200 Weak transcription Colon Smooth Muscle Colon
32 chr2:180007400-180035600 Weak transcription Primary hematopoietic stem cells short term culture blood
33 chr2:180007400-180042200 Weak transcription Brain Angular Gyrus brain
34 chr2:180007400-180043000 Weak transcription Aorta Aorta
35 chr2:180007600-180030400 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr2:180007600-180031000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr2:180007600-180031200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr2:180008400-180030600 Weak transcription iPS-20b Cell Line embryonic stem cell
39 chr2:180008400-180042200 Weak transcription Brain Inferior Temporal Lobe brain
40 chr2:180008600-180028400 Weak transcription Duodenum Smooth Muscle Duodenum
41 chr2:180008600-180029400 Weak transcription Primary hematopoietic stem cells blood
42 chr2:180008600-180037600 Weak transcription Fetal Thymus thymus
43 chr2:180008600-180038400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr2:180008600-180048400 Weak transcription Small Intestine intestine
45 chr2:180009000-180026000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr2:180011200-180029000 Weak transcription Dnd41 blood
47 chr2:180011800-180039400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr2:180012000-180023000 Weak transcription Pancreatic Islets Pancreatic Islet
49 chr2:180013200-180044400 Weak transcription Fetal Kidney kidney
50 chr2:180014600-180027800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015