Variant report

Variant	rs10173118
Chromosome Location	chr2:39005205-39005206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:328)
CpG islands
(count:61)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:328 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:39005202-39005434	A549	lung:	n/a	n/a
2	POLR2A	chr2:39005051-39006374	GM12891	blood:	n/a	n/a
3	YY1	chr2:39005019-39005691	GM12892	blood:	n/a	n/a
4	POLR2A	chr2:39005110-39005590	MCF-7	breast:	n/a	n/a
5	ARID3A	chr2:39005149-39005593	K562	blood:	n/a	n/a
6	EP300	chr2:39005083-39005472	SK-N-SH_RA	brain:	n/a	n/a
7	POLR2A	chr2:39005078-39006344	GM12878	blood:	n/a	n/a
8	ETS1	chr2:39005050-39005685	A549	lung:	n/a	n/a
9	YY1	chr2:39005012-39005850	SK-N-SH_RA	brain:	n/a	n/a
10	POLR2A	chr2:39005076-39005709	MCF-7	breast:	n/a	n/a
11	ARID3A	chr2:39005086-39005671	HepG2	liver:	n/a	n/a
12	SPI1	chr2:39005122-39005440	GM12891	blood:	n/a	chr2:39005307-39005320
13	SIX5	chr2:39005071-39005547	GM12878	blood:	n/a	n/a
14	CREB1	chr2:39004968-39005882	HepG2	liver:	n/a	n/a
15	GABPA	chr2:39005156-39005454	GM12878	blood:	n/a	n/a
16	GABPA	chr2:39005151-39005465	HepG2	liver:	n/a	n/a
17	MYC	chr2:39005165-39005961	MCF10A-Er-Src	breast:	n/a	chr2:39005922-39005929
18	MAFK	chr2:39005128-39005469	K562	blood:	n/a	n/a
19	TAF1	chr2:39005185-39005538	PFSK-1	brain:	n/a	n/a
20	YY1	chr2:39004963-39005627	ECC-1	luminal epithelium:	n/a	n/a
21	TCF12	chr2:39004891-39006078	A549	lung:	n/a	n/a
22	POLR2A	chr2:39005048-39005513	K562	blood:	n/a	n/a
23	GABPA	chr2:39004937-39005929	A549	lung:	n/a	n/a
24	E2F6	chr2:39005129-39005810	H1-hESC	embryonic stem cell:	n/a	n/a
25	ZNF143	chr2:39005018-39005806	K562	blood:	n/a	n/a
26	MAX	chr2:39005024-39005610	ECC-1	luminal epithelium:	n/a	n/a
27	MXI1	chr2:39005099-39006038	GM12878	blood:	n/a	n/a
28	MYC	chr2:39005204-39005524	HUVEC	blood vessel:	n/a	n/a
29	POLR2A	chr2:39005116-39006221	GM19099	blood:	n/a	n/a
30	ELF1	chr2:39005198-39005407	K562	blood:	n/a	chr2:39005307-39005320
31	POLR2A	chr2:39004959-39005768	HUVEC	blood vessel:	n/a	n/a
32	MXI1	chr2:39005134-39006084	HepG2	liver:	n/a	n/a
33	CREB1	chr2:39004982-39005788	GM12878	blood:	n/a	n/a
34	REST	chr2:39005075-39005588	HepG2	liver:	n/a	n/a
35	SIX5	chr2:39005122-39005497	K562	blood:	n/a	n/a
36	GABPA	chr2:39005151-39005446	GM12878	blood:	n/a	n/a
37	IRF1	chr2:39005108-39005589	K562	blood:	n/a	n/a
38	POLR2A	chr2:39005137-39005536	MCF-7	breast:	n/a	n/a
39	ELF1	chr2:39005005-39005884	MCF-7	breast:	n/a	chr2:39005307-39005320
40	SP1	chr2:39005015-39005723	A549	lung:	n/a	n/a
41	POLR2A	chr2:39005061-39005862	GM12892	blood:	n/a	n/a
42	POLR2A	chr2:39005097-39005619	SK-N-MC	brain:	n/a	n/a
43	RAD21	chr2:39005189-39005864	IMR90	lung:	n/a	n/a
44	HEY1	chr2:39004969-39005834	HepG2	liver:	n/a	n/a
45	POLR2A	chr2:39005103-39006190	GM18505	blood:	n/a	n/a
46	ELF1	chr2:39005064-39005481	HepG2	liver:	n/a	chr2:39005307-39005320
47	POLR2A	chr2:39005078-39006128	MCF10A-Er-Src	breast:	n/a	n/a
48	YY1	chr2:39005011-39005591	SK-N-SH_RA	brain:	n/a	n/a
49	MAX	chr2:39004957-39005996	ECC-1	luminal epithelium:	n/a	chr2:39005922-39005929
50	TBL1XR1	chr2:39005122-39005520	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr2:39005158-39005208	HEK293	kidney:	embryo
2	chr2:39005158-39005208	NHDF-neo	bronchial:	n/a
3	chr2:39005158-39005208	LNCaP	prostate:	n/a
4	chr2:39005158-39005208	HUVEC	blood vessel:	n/a
5	chr2:39005158-39005208	SK-N-SH_RA	brain:	n/a
6	chr2:39005158-39005208	NB4	blood:	n/a
7	chr2:39005158-39005208	GM12878	blood:	n/a
8	chr2:39005158-39005208	HL-60	blood:	n/a
9	chr2:39005158-39005208	Hela-S3	cervix:	n/a
10	chr2:39005158-39005208	AG10803	skin:	n/a
11	chr2:39005158-39005208	RPTEC	kidney:	n/a
12	chr2:39005158-39005208	MCF10A-Er-Src	breast:	n/a
13	chr2:39005158-39005208	HCPEpiC	choroid plexus:	n/a
14	chr2:39005158-39005208	AG04449	skin:	fetal
15	chr2:39005158-39005208	H1-hESC	embryonic stem cell:	embryo
16	chr2:39005158-39005208	HCT-116	colon:	n/a
17	chr2:39005158-39005208	NHBE	bronchial:	n/a
18	chr2:39005158-39005208	ECC-1	luminal epithelium:	n/a
19	chr2:39005158-39005208	PFSK-1	brain:	n/a
20	chr2:39005158-39005208	NT2-D1	testis:	n/a
21	chr2:39005158-39005208	HIPEpiC	eye:	n/a
22	chr2:39005158-39005208	AG04450	lung:	fetal
23	chr2:39005158-39005208	HMEC	breast:	n/a
24	chr2:39005158-39005208	CMK	blood:	n/a
25	chr2:39005158-39005208	A549	lung:	n/a
26	chr2:39005158-39005208	HPAEpiC	pulmonary alveolar:	n/a
27	chr2:39005158-39005208	SK-N-SH	brain:	n/a
28	chr2:39005158-39005208	AG09319	gingival:	n/a
29	chr2:39005158-39005208	ProgFib	skin:	n/a
30	chr2:39005158-39005208	Caco-2	colon:	n/a
31	chr2:39005158-39005208	HEEpiC	esophagus:	n/a
32	chr2:39005158-39005208	MCF-7	breast:	n/a
33	chr2:39005158-39005208	HRE	kidney:	n/a
34	chr2:39005158-39005208	HNPCEpiC	eye:	n/a
35	chr2:39005158-39005208	AoSMC	blood vessel:	n/a
36	chr2:39005158-39005208	HRPEpiC	eye:	n/a
37	chr2:39005158-39005208	BE2_C	brain:	n/a
38	chr2:39005158-39005208	HRCEpiC	kidney:	n/a
39	chr2:39005158-39005208	HAEpiC	amniotic membrane:	n/a
40	chr2:39005158-39005208	U87	brain:	n/a
41	chr2:39005158-39005208	IMR90	lung:	fetal
42	chr2:39005158-39005208	HCF	heart:	n/a
43	chr2:39005158-39005208	SKMC	muscle:	n/a
44	chr2:39005158-39005208	GM19239	blood:	n/a
45	chr2:39005158-39005208	Jurkat	blood:	n/a
46	chr2:39005158-39005208	GM12891	blood:	n/a
47	chr2:39005158-39005208	ovcar-3	ovarian:	n/a
48	chr2:39005158-39005208	HepG2	liver:	n/a
49	chr2:39005158-39005208	GM06990	blood:	n/a
50	chr2:39005158-39005208	K562	blood:	n/a

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:38974982..38979904-chr2:39002191..39014206,31	MCF-7	breast:
2	chr2:38975156..38979928-chr2:39002986..39007194,11	MCF-7	breast:
3	chr2:38975148..38982473-chr2:39000165..39007764,21	K562	blood:
4	chr2:38976218..38980921-chr2:39003670..39007764,15	K562	blood:
5	chr2:39004566..39006965-chr2:39038166..39040437,2	MCF-7	breast:

No data

Variant related genes	Relation type
GEMIN6	TF binding region
GEMIN6	CpG island
ENSG00000152147	Chromatin interaction
ENSG00000115875	Chromatin interaction
ENSG00000223922	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10168789	0.82[ASN][1000 genomes]
rs10173240	0.89[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10176932	0.94[CHB][hapmap];0.87[CHD][hapmap]
rs10197412	0.87[ASW][hapmap];0.89[CEU][hapmap];0.83[LWK][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10865143	0.87[ASW][hapmap];0.92[CEU][hapmap];0.90[LWK][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10865144	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11124646	0.94[CHB][hapmap];0.86[CHD][hapmap]
rs11689954	0.84[JPT][hapmap]
rs11694383	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11889280	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12465043	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12468732	0.95[ASN][1000 genomes]
rs12469681	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12472454	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12473036	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12477252	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12618118	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12623330	0.92[JPT][hapmap]
rs12712621	0.86[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs12712622	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12991609	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12996194	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13011522	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13014136	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13029406	0.87[ASW][hapmap];0.89[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.88[LWK][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13383541	0.89[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13411868	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13417196	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529625	0.81[CEU][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs1530852	0.93[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];0.92[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1530853	0.93[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];0.92[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1979142	0.89[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1997377	0.88[CHB][hapmap];0.90[CHD][hapmap];0.86[MEX][hapmap]
rs2037875	0.87[ASW][hapmap];0.89[CEU][hapmap];0.85[LWK][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2272445	0.94[CHB][hapmap];0.89[CHD][hapmap];0.82[MEX][hapmap]
rs3099952	0.88[ASN][1000 genomes]
rs3099960	0.85[ASN][1000 genomes]
rs3099965	0.95[EUR][1000 genomes]
rs3099984	0.84[ASN][1000 genomes]
rs3099985	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3099987	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3099988	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3099989	0.86[ASN][1000 genomes]
rs3099991	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3112140	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3112149	0.85[ASN][1000 genomes]
rs3112198	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3112200	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3112205	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3112209	0.81[ASN][1000 genomes]
rs3112210	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3112215	0.88[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap]
rs3112216	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3731838	0.83[MEX][hapmap]
rs3770681	0.94[CHB][hapmap];0.90[GIH][hapmap];0.92[JPT][hapmap];0.82[MEX][hapmap];0.84[ASN][1000 genomes]
rs4602206	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4630748	0.92[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4670894	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4670897	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56393601	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60012208	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62144837	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6544175	0.84[ASN][1000 genomes]
rs6715866	0.87[ASW][hapmap];0.92[CEU][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6723868	0.88[ASN][1000 genomes]
rs6728394	0.94[CHB][hapmap];0.90[CHD][hapmap];0.86[MEX][hapmap]
rs6746818	0.92[CEU][hapmap]
rs6753251	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6756847	0.94[CHB][hapmap];0.90[CHD][hapmap];0.82[MEX][hapmap]
rs7419616	0.81[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.88[LWK][hapmap];0.95[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7419838	0.92[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7588621	0.84[ASN][1000 genomes]
rs7589162	0.81[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7598922	0.92[JPT][hapmap]
rs7603676	0.94[CHB][hapmap];0.90[CHD][hapmap];0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916059	chr2:38332341-39119398	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	143 gene(s)	inside rSNPs	diseases
2	nsv9646	chr2:38358311-39082189	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
3	esv1798055	chr2:38955865-39039504	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
4	nsv1014616	chr2:38985472-39022893	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10173118	DHX57	cis	parietal	SCAN
rs10173118	SFRS7	Cis_1M	lymphoblastoid	RTeQTL
rs10173118	DHX57	cis	cerebellum	SCAN
rs10173118	MORN2	cis	parietal	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39004400-39006200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:39004600-39005800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:39004600-39005800	Active TSS	Cortex derived primary cultured neurospheres	brain
4	chr2:39004600-39005800	Active TSS	Brain Germinal Matrix	brain
5	chr2:39004600-39005800	Active TSS	Brain Substantia Nigra	brain
6	chr2:39004600-39005800	Active TSS	Duodenum Mucosa	Duodenum
7	chr2:39004600-39006000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:39004600-39006600	Active TSS	A549	lung
9	chr2:39004800-39005400	Active TSS	Primary hematopoietic stem cells short term culture	blood
10	chr2:39004800-39005400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
11	chr2:39004800-39005400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
12	chr2:39004800-39005400	Active TSS	Fetal Thymus	thymus
13	chr2:39004800-39005400	Active TSS	Osteobl	bone
14	chr2:39004800-39005600	Active TSS	Primary T cells from cord blood	blood
15	chr2:39004800-39005600	Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr2:39004800-39005600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:39004800-39005600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:39004800-39005600	Active TSS	Adipose Nuclei	Adipose
19	chr2:39004800-39005600	Active TSS	Liver	Liver
20	chr2:39004800-39005600	Active TSS	Stomach Smooth Muscle	stomach
21	chr2:39004800-39005600	Active TSS	Dnd41	blood
22	chr2:39004800-39005600	Active TSS	Monocytes-CD14+_RO01746	blood
23	chr2:39004800-39005800	Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr2:39004800-39005800	Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr2:39004800-39005800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr2:39004800-39005800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr2:39004800-39005800	Active TSS	Brain Anterior Caudate	brain
28	chr2:39004800-39005800	Active TSS	Brain Cingulate Gyrus	brain
29	chr2:39004800-39005800	Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr2:39004800-39005800	Active TSS	Fetal Brain Female	brain
31	chr2:39004800-39005800	Active TSS	Placenta	Placenta
32	chr2:39004800-39005800	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr2:39004800-39005800	Active TSS	Thymus	Thymus
34	chr2:39004800-39005800	Active TSS	Hela-S3	cervix
35	chr2:39004800-39005800	Active TSS	NHLF	lung
36	chr2:39004800-39006000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr2:39004800-39006000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr2:39004800-39006000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr2:39004800-39006000	Active TSS	Aorta	Aorta
40	chr2:39004800-39006000	Active TSS	Brain Angular Gyrus	brain
41	chr2:39004800-39006000	Active TSS	Brain Inferior Temporal Lobe	brain
42	chr2:39004800-39006000	Active TSS	Fetal Intestine Large	intestine
43	chr2:39004800-39006000	Active TSS	Fetal Intestine Small	intestine
44	chr2:39004800-39006000	Active TSS	Fetal Kidney	kidney
45	chr2:39004800-39006000	Active TSS	Fetal Stomach	stomach
46	chr2:39004800-39006000	Active TSS	K562	blood
47	chr2:39004800-39006200	Active TSS	HUES6 Cell Line	embryonic stem cell
48	chr2:39004800-39006200	Flanking Active TSS	Primary B cells from cord blood	blood
49	chr2:39004800-39006200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
50	chr2:39004800-39006200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links