Variant report

Variant	rs10173183
Chromosome Location	chr2:179276427-179276428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10188593	0.97[ASN][1000 genomes]
rs10201175	0.80[EUR][1000 genomes]
rs10204497	0.87[EUR][1000 genomes]
rs11688081	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1560870	0.87[EUR][1000 genomes]
rs2114581	0.86[EUR][1000 genomes]
rs2288320	0.81[ASN][1000 genomes]
rs2366601	0.80[EUR][1000 genomes]
rs28773318	0.97[ASN][1000 genomes]
rs3769867	0.95[ASN][1000 genomes]
rs4019558	0.88[EUR][1000 genomes]
rs4404314	0.84[EUR][1000 genomes]
rs4894017	0.88[EUR][1000 genomes]
rs57115861	0.93[ASN][1000 genomes]
rs7589565	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7589679	0.88[EUR][1000 genomes]
rs7605289	0.86[EUR][1000 genomes]
rs9288019	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9973732	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834466	chr2:179140792-179284778	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv834467	chr2:179258140-179430965	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179269400-179277600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:179270000-179277800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr2:179270000-179277800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr2:179270600-179277800	Weak transcription	HSMM	muscle
5	chr2:179271000-179277000	Weak transcription	K562	blood
6	chr2:179271000-179277600	Weak transcription	GM12878-XiMat	blood
7	chr2:179271000-179277800	Weak transcription	HSMMtube	muscle
8	chr2:179272200-179277600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:179272200-179278000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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