Variant report

Variant	rs2366601
Chromosome Location	chr2:179271363-179271364
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10173183	0.80[EUR][1000 genomes]
rs10201175	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10204497	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1434085	0.91[ASN][1000 genomes]
rs1560870	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2114581	0.89[EUR][1000 genomes]
rs2276617	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4019558	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4404314	0.87[EUR][1000 genomes]
rs4894017	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6720559	0.91[ASN][1000 genomes]
rs6757186	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs723841	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs728005	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7589679	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7605289	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs890579	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs919177	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9288019	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834466	chr2:179140792-179284778	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv834467	chr2:179258140-179430965	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179269200-179271800	Weak transcription	NHLF	lung
2	chr2:179269400-179271800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:179269400-179271800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:179269400-179277600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr2:179269600-179271800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:179269600-179271800	Weak transcription	NHDF-Ad	bronchial
7	chr2:179270000-179271800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr2:179270000-179277800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr2:179270000-179277800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr2:179270600-179277800	Weak transcription	HSMM	muscle
11	chr2:179271000-179277000	Weak transcription	K562	blood
12	chr2:179271000-179277600	Weak transcription	GM12878-XiMat	blood
13	chr2:179271000-179277800	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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