Variant report

Variant	rs10173335
Chromosome Location	chr2:152512992-152512993
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:152504736..152506561-chr2:152512908..152515654,2	MCF-7	breast:
2	chr2:152511087..152513556-chr2:152516616..152519080,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10169098	0.87[CHD][hapmap];0.82[JPT][hapmap]
rs10172958	0.80[CEU][hapmap];0.82[JPT][hapmap]
rs10186879	0.81[ASN][1000 genomes]
rs10192459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202662	0.80[CEU][hapmap]
rs10204195	0.85[ASN][1000 genomes]
rs10210114	0.81[ASN][1000 genomes]
rs10497093	0.82[JPT][hapmap]
rs11692567	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11885813	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12328396	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12693088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12992632	0.80[CEU][hapmap];0.82[JPT][hapmap]
rs12994595	1.00[JPT][hapmap]
rs13025954	0.80[CEU][hapmap]
rs13384856	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs13408513	0.85[ASN][1000 genomes]
rs13427102	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[ASN][1000 genomes]
rs13429567	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16830400	1.00[JPT][hapmap]
rs2030589	0.87[CHD][hapmap];0.82[JPT][hapmap]
rs2030590	0.82[JPT][hapmap]
rs36141926	0.85[ASN][1000 genomes]
rs3768656	0.82[JPT][hapmap]
rs4436952	0.81[ASN][1000 genomes]
rs4503987	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4525690	0.80[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs66468516	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6729878	0.82[JPT][hapmap]
rs6750638	0.81[ASN][1000 genomes]
rs6754783	0.81[ASN][1000 genomes]
rs7560854	0.80[CEU][hapmap];0.82[JPT][hapmap]
rs7565109	0.81[ASN][1000 genomes]
rs7591363	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934136	chr2:152308156-152664443	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1005746	chr2:152361972-153059840	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv535984	chr2:152361972-153059840	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv469804	chr2:152404429-152570882	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv482520	chr2:152404429-152570882	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152502200-152523000	Weak transcription	Placenta	Placenta
2	chr2:152504400-152531600	Weak transcription	Primary B cells from cord blood	blood
3	chr2:152505200-152543600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:152507600-152521000	Weak transcription	Psoas Muscle	Psoas
5	chr2:152510800-152514000	Strong transcription	HSMMtube	muscle
6	chr2:152510800-152515600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
7	chr2:152511200-152531200	Strong transcription	Fetal Muscle Trunk	muscle
8	chr2:152511400-152514200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
9	chr2:152511400-152531400	Strong transcription	Fetal Muscle Leg	muscle
10	chr2:152511600-152525800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:152512400-152524400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr2:152512800-152513800	Weak transcription	K562	blood

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